BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3296.p
         (185 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093999|ref|YP_001099074.1| putative lipoprotein [Herminiim...   211   1e-56
gi|134094390|ref|YP_001099465.1| hypothetical protein HEAR1160 [...   125   2e-30

>gi|134093999|ref|YP_001099074.1| putative lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 176

 Score =  211 bits (538), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 4/152 (2%)

Query: 34  CGTAPTAPPISRLPGAPQSQVPALPASDNGNEVALYALSLIDTGYRFGGKNPSAGLDCSG 93
           CGT+    P+ R  GA        P S+ GNEVALYA+ +IDTGY+FGGKNP AGLDCSG
Sbjct: 29  CGTSS---PVKR-QGAQAILYEPQPVSEKGNEVALYAMGMIDTGYQFGGKNPEAGLDCSG 84

Query: 94  MVTYIFGQAANYHISGSAADIARRGRQIDPAQLRAGDLVFFNTENRPFSHVGIYLGDGRF 153
           MV+YI+G+A +  ++GSAADIARRG++IDP  LR GDLVFFNT NR FSHVG+Y+GDGRF
Sbjct: 85  MVSYIYGKAVDLKVTGSAADIARRGKEIDPRTLRPGDLVFFNTLNRSFSHVGVYIGDGRF 144

Query: 154 VHAPSTNGKVHISRMDNPYFSRRFEMARTYFN 185
           +HAPS+ GKV I RMDN YF+ RFEMARTYF+
Sbjct: 145 IHAPSSKGKVRIERMDNLYFAPRFEMARTYFD 176


>gi|134094390|ref|YP_001099465.1| hypothetical protein HEAR1160
           [Herminiimonas arsenicoxydans]
          Length = 178

 Score =  125 bits (313), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 2/154 (1%)

Query: 28  ALVLAACGTAPTAPPISRLPGAPQSQVPALPASDNGNEVALYALSLIDTGYRFGGKNPSA 87
           AL L A   A ++  + +    P S++  L  +   +E+AL A+ ++   Y++GG  P  
Sbjct: 20  ALSLMATSAAWSSDLLMQETDKPISKLQDL--THRASELALQAMGMLGIRYKYGGSTPEN 77

Query: 88  GLDCSGMVTYIFGQAANYHISGSAADIARRGRQIDPAQLRAGDLVFFNTENRPFSHVGIY 147
           GLDCSG+V +IF +A    +  ++ +I+R G  I+   L+ GDLVF+NT  R FSHVGIY
Sbjct: 78  GLDCSGLVQHIFKEAWGKDLPRTSVEISRVGEHIEKKDLQPGDLVFYNTLKRGFSHVGIY 137

Query: 148 LGDGRFVHAPSTNGKVHISRMDNPYFSRRFEMAR 181
           LGD +F+H+PS  G+V I  MD  Y+ +RF   R
Sbjct: 138 LGDRKFIHSPSPGGQVRIESMDVAYWKKRFNGGR 171


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 346,455
Number of extensions: 14490
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 109
Effective length of database: 749,927
Effective search space: 81742043
Effective search space used: 81742043
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)