BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3294.p
         (346 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094001|ref|YP_001099076.1| CDP-6-deoxy-delta-3,4-glucoseen...   547   e-157
gi|134093902|ref|YP_001098977.1| putative flavohemoprotein [Herm...    58   9e-10

>gi|134094001|ref|YP_001099076.1| CDP-6-deoxy-delta-3,4-glucoseen
           reductase [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  547 bits (1410), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 245/340 (72%), Positives = 301/340 (88%)

Query: 1   MSFQVTVQPSGRQFTCDADESILTAAIRAGVGLPYGCKNGACSSCKGKLLSGQVEHGAHQ 60
           M+FQVTVQPSGRQF+C+ADE+IL+AAIRAGVGLPYGCKNGAC SC+G +LSG V HGAHQ
Sbjct: 1   MTFQVTVQPSGRQFSCEADETILSAAIRAGVGLPYGCKNGACGSCRGMVLSGDVTHGAHQ 60

Query: 61  ERALSAHEEQLGYALFCVAKPQSDVTIEAREVAGVGEIPVRKLPVRVAKLEKVADDVIIL 120
           ERAL A +E  G++LFC A+P  DV IEAREV G+GE P++KLP R+A+LE+V DDV+ +
Sbjct: 61  ERALPAADEAKGFSLFCCARPHGDVVIEAREVLGLGEFPIKKLPSRIARLERVGDDVMSI 120

Query: 121 SLQLPANDRLQYKAGQYVEFLLRDGKRRSYSMANAPHKDEPMSLHIRHLPGGLFTDQVFS 180
           +LQLPA+++LQY+AGQY+EF+L+DGKRRSYS+ANAPH  E ++LHIRH+PGGLFTDQVFS
Sbjct: 121 ALQLPASEKLQYRAGQYIEFMLKDGKRRSYSLANAPHVGEHVTLHIRHMPGGLFTDQVFS 180

Query: 181 TLKERDILRIEGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLQHAGSKRPVTLYWG 240
           T+KERDILR EGPLG+FFLREDSDKP++LLASGTGFAPIKAIVEQ  H  S+RP+TLYWG
Sbjct: 181 TMKERDILRFEGPLGSFFLREDSDKPMVLLASGTGFAPIKAIVEQAVHIKSERPMTLYWG 240

Query: 241 GRRPQDLYLNALCQQWEQELPDFKYVPVVSNAQPEDHWSGRTGFVHRAVMEDFPDLSAHQ 300
           GRRP+DLY++ALC++W + +P+F+YVPV+SNA  ED W+G+TGFVH+ VM D PDLS +Q
Sbjct: 241 GRRPKDLYMHALCEEWARTIPNFRYVPVISNATQEDQWNGQTGFVHQVVMNDLPDLSNYQ 300

Query: 301 VYACGAPIVVESAQRDFSAQCKLPEGEFYADSFTSEADLA 340
           VYACGAP +V++A+ DFSA C LPE EFYAD+FTSEADLA
Sbjct: 301 VYACGAPAMVDAARTDFSASCNLPEEEFYADAFTSEADLA 340


>gi|134093902|ref|YP_001098977.1| putative flavohemoprotein
           [Herminiimonas arsenicoxydans]
          Length = 397

 Score = 57.8 bits (138), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 19/252 (7%)

Query: 82  QSDVTIEAREVAGVGEIPVRKLPVRVAKLEKVADDVIILSLQLPANDRL--QYKAGQYVE 139
           Q+ +  E R     G  P     +RV  +EK  +   + S  + A DR   +++ GQYV 
Sbjct: 131 QALIDEENRLYQAAGVEPGDLFNMRVVAVEK--ESAQVTSYSMVAVDRQLPEFQPGQYVS 188

Query: 140 F--LLRDGKR--RSYSMANAP-HKDEPMSLHIR----HLPGGLFTDQVFSTLKERDILRI 190
               L DG R  R YS++ +P H+   +S+         P G+ ++ +   +    IL +
Sbjct: 189 VAVFLPDGLRQLRQYSLSESPDHQHLRISVKREVAGAETPAGVVSNWLHDNVVVGSILPV 248

Query: 191 EGPLGTFFLREDSDKPIILLASGTGFAPIKAIVEQLQHAGSKRPVTLYWGGRRPQDLYLN 250
             P G F    D + PI+LL++G G  P+ + + ++     +R V      R        
Sbjct: 249 SMPAGDFTPDTDGEDPIVLLSAGVGITPMISALNRIAKVSPRRRVIFAHAARNAHHHPHR 308

Query: 251 ALCQQWEQELPDFKYVPVVSNAQPEDHWSGRTGFVHRAVMEDFP--DLSAHQVYACGAPI 308
           A   +    +P+   V     A+ +D     T    R  ++  P  D+   QVY CG   
Sbjct: 309 ADIAKAVASMPNLHSVTFYEEAEHDD----ETSLAGRMELQKLPQWDVKKSQVYMCGPLP 364

Query: 309 VVESAQRDFSAQ 320
            +++   D  AQ
Sbjct: 365 FMQAQWADLLAQ 376


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 702,024
Number of extensions: 30897
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 264
Effective length of database: 730,157
Effective search space: 192761448
Effective search space used: 192761448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)