BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3293.p
         (293 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094002|ref|YP_001099077.1| putative nucleoside-diphosphate...   395   e-111

>gi|134094002|ref|YP_001099077.1| putative
           nucleoside-diphosphate-sugar epimerases [Herminiimonas
           arsenicoxydans]
          Length = 304

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 195/285 (68%), Positives = 224/285 (78%)

Query: 3   KLGLPRVLILGCGDVGLRLLPLLLPRYRVLAVTSQPGRCAELRAAGAVPVLADLDHPLSL 62
           K G PR+LILGCGDVG+RLLPLL  R+R+ AVT+Q  R   LRAAGA+P++A+LD P +L
Sbjct: 13  KFGKPRLLILGCGDVGMRLLPLLCTRFRIFAVTTQASRQDALRAAGAIPIIANLDQPATL 72

Query: 63  GRLARLAPTIVHLAPPQSEGRLDRRTRNLAAILPEGARLVYISTTGVYGDCAGASFDETR 122
            RLARLA  I+HLAPPQS+G +DRRTRNL +ILP+ A LVY+ST+GVYGDC GA  DETR
Sbjct: 73  ARLARLAQNIIHLAPPQSDGSIDRRTRNLTSILPDHAVLVYVSTSGVYGDCGGACIDETR 132

Query: 123 RVHPQNTRAVRRVDAETVLRAWARRRHGKLSILRVPGIYAVDRLPLERLHKGLPALSAAE 182
            V P N RA RRVDAE VLR WARR   +L ILRVPGIYA DRLPLERL KGLPAL+A E
Sbjct: 133 TVQPHNLRATRRVDAEQVLRNWARRSQSRLGILRVPGIYAGDRLPLERLQKGLPALAADE 192

Query: 183 DVYTNHIHADDLARVAAAALRLGAPNRIYHAVDDSDLKMADYFDLVADAAGLSRPPRLPR 242
           DVYTNHIHADDLA+V A AL    P R+YHAVDDS++KM  YFD VADA  L RPPRL R
Sbjct: 193 DVYTNHIHADDLAQVIALALFRAQPGRVYHAVDDSEMKMGSYFDAVADAFALERPPRLTR 252

Query: 243 SELERNVSPMMLSFMSESRRLENRRIKEELGVRLRYPDVPSLLAQ 287
            +L   VSPMMLSFMSESRR+ N+R+K ELG+RLR+P V   L Q
Sbjct: 253 EKLRYAVSPMMLSFMSESRRMSNQRMKAELGMRLRHPTVAHALKQ 297


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 478,679
Number of extensions: 16460
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 212
Effective length of database: 733,452
Effective search space: 155491824
Effective search space used: 155491824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)