BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3292.p (257 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-bin... 180 5e-47 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 169 2e-43 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 159 1e-40 gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting A... 159 2e-40 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 151 2e-38 >gi|134093702|ref|YP_001098777.1| nitrate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 271 Score = 180 bits (457), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 92/205 (44%), Positives = 130/205 (63%), Gaps = 3/205 (1%) Query: 13 GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPE 72 G + + + +A GE + L+G SGCGKSTLL++ AGL + + G + ++ I GP PE Sbjct: 23 GVFNALTDINLTVAKGEFITLIGHSGCGKSTLLNLIAGLTQSTGGMLLCGNREIAGPSPE 82 Query: 73 RTLMFQENALYPWLTLQQNVALALE--FQGV-NKQVAAEQARTWLEKVKLKGFEHYYPHQ 129 R ++FQ ++L PWLT +NV LA+E F V K + R L V L E P++ Sbjct: 83 RAVVFQNHSLLPWLTCYENVYLAVERVFGKVEGKAKLRARTRAALSLVGLTHAEQKRPNE 142 Query: 130 VSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHD 189 +SGGM+QR +ARA +PK LL+DEPFGALDALTR LQD L +++ G TVV+VTHD Sbjct: 143 ISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHD 202 Query: 190 VDEALFLADRIFVFSPRPAKVLKEF 214 VDEA+ L+D+I + + P+ + E Sbjct: 203 VDEAVLLSDKIVMLTNGPSATIGEI 227 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 4/233 (1%) Query: 3 LSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGD 62 L N+ +RFGD V++ + I +GE L+GPSGCGK+TLL M AG ++P +G + D Sbjct: 4 LEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLD 63 Query: 63 DQAIRGPHPERTLM---FQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKVKL 119 + G PE+ ++ FQ AL+P +T+ N+A LE K ++ LE V+L Sbjct: 64 GVDLTGVPPEQRVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEALEDVRL 123 Query: 120 KGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQ 179 GF YPH++SGG RQR ++ARA +++PK LLLDEP ALDA R +Q L L ++ Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 180 GPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNLVH-HEKTHDLSEFAAT 231 G T V VTHD EAL L+ RI V + + L E ++ + ++ +++F T Sbjct: 184 GITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGT 236 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 159 bits (403), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 142/259 (54%), Gaps = 9/259 (3%) Query: 3 LSFNNVAKRFGD-----LHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSG 57 + VAK F V+E +A GE+VAL+G SG GKSTLL + AGL G Sbjct: 7 IELKGVAKSFKTADGTPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQG 66 Query: 58 TVAGDDQAIRGPHPERTLMFQENALYPWLTLQQNVALALEFQGVNKQVAAEQARTWLEKV 117 T Q I P ++FQ AL+PWLT+QQNV L LE QG+ ++A L+ + Sbjct: 67 TAKYRGQEIYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLI 126 Query: 118 KLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRELIR 177 L GF P ++SGGM+QR +AR ++ P LL+DE F ALD LT TL+D + E+ Sbjct: 127 GLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWE 186 Query: 178 QQG-PT--VVLVTHDVDEALFLADRIFVFSPRPAKVLKEFNL-VHHEKTHDLSEFAATRR 233 ++ PT +++V+H+++EA+ +ADRI V S P ++ E + + + D E A Sbjct: 187 EKRIPTKGILIVSHNIEEAVMMADRILVLSSSPGRIRSEIRINLPRPRNVDSVEIRALID 246 Query: 234 EILGLLGIHAEQDEFAKNL 252 E+ L+ + + + A + Sbjct: 247 EVYALMTMRTQPETTAGGI 265 >gi|134096488|ref|YP_001101563.1| putative Sulfate-transporting ATPase [Herminiimonas arsenicoxydans] Length = 262 Score = 159 bits (401), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 84/194 (43%), Positives = 116/194 (59%), Gaps = 2/194 (1%) Query: 24 EIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVAGDDQAIRGPHPERTLMFQE-NAL 82 ++ + L+GPSGCGKSTLL G P+ G + D+ I P +R ++FQE + L Sbjct: 34 KVYKSDRFVLLGPSGCGKSTLLKAVGGYMMPTEGEMRLHDKVITKPWYDRMMVFQEFDQL 93 Query: 83 YPWLTLQQNVALALEFQGVNKQVAAE-QARTWLEKVKLKGFEHYYPHQVSGGMRQRAALA 141 PW T++QNV L G K AE +A ++EKV L F +YPH +SGGM+QR A+A Sbjct: 94 PPWKTVKQNVMFPLLASGKLKGKEAEDKAMYYIEKVNLSKFADHYPHMLSGGMKQRVAIA 153 Query: 142 RAFISQPKALLLDEPFGALDALTRMTLQDALRELIRQQGPTVVLVTHDVDEALFLADRIF 201 R +P LL+DEP+ ALDALTR +QD L +L TV+ VTH + EA+ + +RI Sbjct: 154 RGMAMEPDILLMDEPYAALDALTRKKMQDELLQLWDDTHFTVLFVTHSIAEAVKIGNRIL 213 Query: 202 VFSPRPAKVLKEFN 215 + SP P +V E N Sbjct: 214 LLSPHPGQVTAELN 227 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 151 bits (382), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/211 (42%), Positives = 125/211 (59%), Gaps = 7/211 (3%) Query: 1 MKLSFNNVAKRFGDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSSGTVA 60 M + N+ K+FG+ + + + E +GEL AL+GPSGCGK+TLL + AGLE+P G V Sbjct: 1 MSIEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 61 GDDQAIRGPH-PERTL--MFQENALYPWLTLQQNVALALEFQGV----NKQVAAEQARTW 113 D + H ER + +FQ AL+ +T+ +N+A L + ++ V E+ Sbjct: 61 LDGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKL 120 Query: 114 LEKVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALR 173 LE V+L YP Q+SGG RQR ALARA +P+ LLLDEPFGALDA R L+ LR Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 174 ELIRQQGPTVVLVTHDVDEALFLADRIFVFS 204 L + T + VTHD +EAL +AD+I + + Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQIVLMN 211 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 489,438 Number of extensions: 19661 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 49 Length of query: 257 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 177 Effective length of database: 736,747 Effective search space: 130404219 Effective search space used: 130404219 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)