BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3290.p
         (257 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permeas...    76   1e-15
gi|134096489|ref|YP_001101564.1| putative transmembranee ABC tra...    65   4e-12

>gi|134093701|ref|YP_001098776.1| nitrate ABC transporter permease
           [Herminiimonas arsenicoxydans]
          Length = 304

 Score = 76.3 bits (186), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 104/201 (51%), Gaps = 8/201 (3%)

Query: 17  LLAIAFILLMWQIAAWSLPSFLMPGVP-EVAVRLWEEVQSSNFRAA------LFGSLYRL 69
           +  + F++L+W+I +        P V  + A+ L+ +   SN          +  SL R+
Sbjct: 58  IFGVLFLVLVWEIISAKNSGIPSPAVTLKSAIDLFADPFYSNGPNDQGIGWNILASLKRV 117

Query: 70  GLGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVV 129
            +G+G A ++GI  G +     F   +    I +L+ +  +AW+P+ L++    +   + 
Sbjct: 118 AVGFGLAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVFKAADPAAIW 177

Query: 130 VVAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAF 189
            + I + +P  ++     + V Q +++ ARV+  S   ++ ++  P+V+P ++TG +LA 
Sbjct: 178 SIFICSIWPMIINTAVGVQRVPQDYMNVARVLNLSEWKIVTKILFPSVLPYMLTGVRLAI 237

Query: 190 GNAWRALISAEMLVGFGKGLG 210
           G AW  +++AEML G G G+G
Sbjct: 238 GTAWLVIVAAEMLTG-GVGIG 257


>gi|134096489|ref|YP_001101564.1| putative transmembranee ABC
           transporter protein [Herminiimonas arsenicoxydans]
          Length = 308

 Score = 65.1 bits (157), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 12  KKLAMLLAIAFILLMWQIAAWSLP-SFLMPGVPEVAVRLWEEVQSSNFRAALFGSLYRLG 70
           +K+ +L+ +A I   W++ A  L  + L P    V   L E V S      ++ S+  L 
Sbjct: 60  RKIGILVLLAVI---WEVYARMLNNTLLFPTFSSVVEALVEGVISGGLLGKVWFSIKILL 116

Query: 71  LGYGSALVLGIGFGLIGAVLFFFREVLKSAIVILQSIPSIAWVPLFLILMGFGNLPIVVV 130
           +GYG+ LVL     +        R+ L++   +   +P+IA +PL L+  G G   +V V
Sbjct: 117 MGYGAGLVLAALLTVFAITSRIGRDFLETLTSMFNPLPAIALLPLSLLWFGLGTGSLVFV 176

Query: 131 VAIAAFFPAALSVMNATESVQQVHVSAARVMGASRLSMLRRVYLPAVMPELITGAQLAFG 190
           +  +  +  AL+  +  +SV           G S L  + ++ +PA  P ++TG ++ + 
Sbjct: 177 LIHSVVWAVALNTHSGFQSVSTTLRMVGHNYGLSGLRYVFQILIPAAFPSILTGLKIGWA 236

Query: 191 NAWRALISAEMLVGFGKGLGRTLAYSGETADMI---GVMANILTIAILAALIDQVILENL 247
            AWR LI+AE++ G   G G    +  E  + +    V A +LT+ ++   ++  I   +
Sbjct: 237 FAWRTLIAAELVFGVSSGSGGLGWFIYENKNQLEIPSVFAGLLTVIMIGLFVENFIFRTI 296

Query: 248 KH 249
           + 
Sbjct: 297 EQ 298


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 364,473
Number of extensions: 11785
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 3
Length of query: 257
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 177
Effective length of database: 736,747
Effective search space: 130404219
Effective search space used: 130404219
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)