BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3287.p (340 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096466|ref|YP_001101541.1| putative signal peptide [Hermin... 138 5e-34 gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [... 134 4e-33 gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein... 130 9e-32 gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [... 129 3e-31 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 123 2e-29 >gi|134096466|ref|YP_001101541.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 492 Score = 138 bits (347), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/176 (43%), Positives = 102/176 (57%), Gaps = 4/176 (2%) Query: 158 KLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDKFGHSAG 217 +L +A TD LTGL NR + I + R LS IL D+D FK VND GH AG Sbjct: 318 RLEQIAGTDTLTGLLNRQAFEIVFQQAILDSERRRIPLSAILFDIDFFKMVNDNHGHLAG 377 Query: 218 DAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEASSRMAEKLRLIVERHSFALI 277 D +L SIA I + VR +DIV RWGGEEFL++L C +E ++ +AEK+R ++ H F L Sbjct: 378 DRILQSIAAITKNAVRESDIVTRWGGEEFLVLLKDCPLEQATALAEKIRSMIAGHDFELP 437 Query: 278 DKR---TCSFGVAAYQFGHDGTTLLSLADSALYRAKKNGRNRVEIAIEPEPSVNSR 330 T S GVA Y + + AD+ALY+AK GRNRV I PE + +++ Sbjct: 438 ASALHLTVSLGVAEYAYRETWLSFFGRADTALYQAKSEGRNRV-IVSRPEATTDAQ 492 >gi|134094022|ref|YP_001099097.1| hypothetical protein HEAR0777 [Herminiimonas arsenicoxydans] Length = 568 Score = 134 bits (338), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 76/167 (45%), Positives = 96/167 (57%), Gaps = 1/167 (0%) Query: 152 IEHLNEKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDHFKEVNDK 211 ++ LN L LA TD LTGLANRM +E L E AR R +++LDVD FK VND Sbjct: 391 LQELNITLEQLARTDALTGLANRMHTNERLAEEFARFKRSKIPYCILMLDVDFFKRVNDI 450 Query: 212 FGHSAGDAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEASSRMAEKLRLIVER 271 +GH GD VL +A IL VR TD VGR GGEEFL ILP D A+ +AEK+R +E Sbjct: 451 YGHGVGDEVLKHVASILSATVRKTDFVGRHGGEEFLSILPMTDSSAAMVVAEKIRNTIES 510 Query: 272 HSFALIDKRTCSFGVAAYQFGH-DGTTLLSLADSALYRAKKNGRNRV 317 + T S GV + ++ AD +Y+AKK+GRN+V Sbjct: 511 TPIGPVGNLTVSIGVQEVTVNDINEDVAVTRADECMYQAKKSGRNKV 557 >gi|134094940|ref|YP_001100015.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 519 Score = 130 bits (327), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 79/185 (42%), Positives = 115/185 (62%), Gaps = 8/185 (4%) Query: 146 KLAEQRIEHLNEKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDHF 205 + A +E N +LA LA+ D LTGLANR + D LD E ARA R T L+LI+LDVDHF Sbjct: 330 RTARDDLERSNGELAALALLDSLTGLANRRRFDAALDDEFARAMRNQTSLALIMLDVDHF 389 Query: 206 KEVNDKFGHSAGDAVLVSIAEILRT-NVRATDIVGRWGGEEFLLILPQCDIEASSRMAEK 264 K+ ND++GH GD L I++IL+T R D+V R+GGEEF+++LP D ++ +AE+ Sbjct: 390 KKYNDRYGHPQGDECLKEISKILKTATARTGDLVARYGGEEFVILLPGTDRAGAAAVAER 449 Query: 265 LRLIVE----RHSFALIDKRTCSFGVAAY---QFGHDGTTLLSLADSALYRAKKNGRNRV 317 +RL ++ H+ T S G+AA + + L+ AD ALY+AK++GRN+ Sbjct: 450 VRLAIQALNMEHAETPDGIVTASLGIAALIPQRQQNSPQQLVHAADQALYKAKEDGRNQS 509 Query: 318 EIAIE 322 I+ + Sbjct: 510 CISTQ 514 >gi|134095065|ref|YP_001100140.1| hypothetical protein HEAR1864 [Herminiimonas arsenicoxydans] Length = 524 Score = 129 bits (323), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 107/176 (60%), Gaps = 6/176 (3%) Query: 148 AEQRIEHLN---EKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLILLDVDH 204 AE RI +L E+++ L D+LTG NR L++ + E+ARA R GT L + +LD+D Sbjct: 344 AEARIHNLETKLEQMSELVREDQLTGSLNRRGLEDIFERELARAERRGTPLCIAMLDLDD 403 Query: 205 FKEVNDKFGHSAGDAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEASSRMAEK 264 FK++NDK+GHSAGD L+ + +++ +R+ D++ R+GGEEFL++LP ++ + + + Sbjct: 404 FKKINDKYGHSAGDEALIHLVRVIKETLRSMDVIARFGGEEFLIVLPDTGMDEAVQTVTR 463 Query: 265 LRLIVERHSFALIDKR---TCSFGVAAYQFGHDGTTLLSLADSALYRAKKNGRNRV 317 L+ + + F R T S GVA D ++ AD ALY AK+ G+NRV Sbjct: 464 LQRELTKQIFMHNHTRLLMTFSAGVALRNEREDQRAMIERADKALYEAKRTGKNRV 519 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 123 bits (308), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/299 (33%), Positives = 151/299 (50%), Gaps = 25/299 (8%) Query: 24 RLLRAALDSLDSQIALIDRAGVIRYVNKTWCEFGKENGIPPQYSWIGTNYLAVCRSASKS 83 R L A++ + I + D G I Y N T F G + IG + Sbjct: 307 RKLSQAVEQSSNAIIITDLNGTIEYANTT---FSTNTGYA-LHDIIGK------KPNMHK 356 Query: 84 SEEDGQQVYAGIRSVLESRAPSFQYEYPCHSPN-QQRWFIMRIAPVLEME---SFFVISH 139 S + + YA + + L R S+Q E+ N ++R ++R++PV E + + ++ Sbjct: 357 SGKTSRATYADMWAHL-GRGESWQGEFINRRHNGEERIDLVRVSPVREADGRITHYLAIE 415 Query: 140 SVITGRKLAEQRIEHLNEKLALLAVTDKLTGLANRMKLDETLDSEIARAHRYGTKLSLIL 199 IT +K A+ RIE L A D LTGL NR LDE + A L+++ Sbjct: 416 EDITNQKNAQARIESL-------AHFDVLTGLPNRALLDERAQRALRLAEEDQATLAVMF 468 Query: 200 LDVDHFKEVNDKFGHSAGDAVLVSIAEILRTNVRATDIVGRWGGEEFLLILPQCDIEASS 259 LD+DHFK +ND GH+ GD +LV +A+ LR +R D + R GG+EF+L+LP + E++ Sbjct: 469 LDLDHFKNINDTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAK 528 Query: 260 RMAEKL-RLIVERHSFALIDKRT-CSFGVAAYQF-GHDGTTLLSLADSALYRAKKNGRN 315 ++A++L R I E + + S G+A Y G D TL AD A+YRAK+ GRN Sbjct: 529 KIAQELMRAINEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRN 587 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 610,511 Number of extensions: 23678 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 96 Number of HSP's successfully gapped: 31 Length of query: 340 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 258 Effective length of database: 730,157 Effective search space: 188380506 Effective search space used: 188380506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)