BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3286.p
         (560 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094601|ref|YP_001099676.1| CPA1 family Na+/H+ antiporter [...   396   e-111

>gi|134094601|ref|YP_001099676.1| CPA1 family Na+/H+ antiporter
           [Herminiimonas arsenicoxydans]
          Length = 548

 Score =  396 bits (1017), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 253/543 (46%), Positives = 347/543 (63%), Gaps = 11/543 (2%)

Query: 17  SGVVARLAPFKLPLPLFQIALGAVLALPMFGLRISFDPELFLLLFIPPLLFTDGWRMPKR 76
           SG  ARL P K+PLPL QIA+GA LA   FG+ +  DPE F L FIPPLLF DGWR+PK 
Sbjct: 17  SGFFARLLPIKVPLPLVQIAVGAGLAYG-FGISVPLDPEFFFLFFIPPLLFLDGWRIPKS 75

Query: 77  EFFRLARPILALALGLVMFTVVGVGYFIHWMIPVISLPSAFALAAVLSPTDAVAVSSIVG 136
            FFR  RPI  LA+GLV+FTV+G+GYFIHWMIP + L +AFALAA+LSPTD VAVS+I  
Sbjct: 76  AFFRDVRPITTLAIGLVLFTVLGMGYFIHWMIPSVPLAAAFALAAILSPTDPVAVSAIAS 135

Query: 137 KGRLPASMQHVLEGEALMNDASGLVAFKFAIAAVITGTFSLLDASISFVLIAAGGIAVGL 196
           +  +P  + H+LEGEAL+NDASGLV F+FA+AAVITGTFSLLDAS+ F+  A GG+ VG 
Sbjct: 136 QSPIPPRLMHILEGEALLNDASGLVCFRFALAAVITGTFSLLDASMEFLWAAGGGLLVGA 195

Query: 197 IVAWGFGLIRRKIIEWAGDEPGIQVVLLLLIPFTAYIFAEHFGLSGILAAVAGGMLMPYL 256
           +VAW  G+  + ++   G++PG Q+++ LL+PF AY+ AEH  +SGILAA A G+   Y 
Sbjct: 196 LVAWLIGVANKWLVVAVGEDPGSQILISLLLPFAAYLLAEHLQVSGILAAAAAGITTHYT 255

Query: 257 ETAGGESAATRLQGRSILTMLEFVFNGMSFLLLGLQLPGIVSLAHVDAQMAGNVPEWHLF 316
           +  G   A TR+Q R++   ++   NG+ F++LG Q+   +    + A   G    W L 
Sbjct: 256 DMVGRRLATTRMQRRAVWDTIQMALNGVIFVILGAQIRTTMDGLPMVASSMGLSSAWWLS 315

Query: 317 VYILAITVALIVLRFVWVWVNLRMRRFASALRGQSGRNRKFDLRLISITALSGVRGAITL 376
           +Y++AI VAL  LRF+WVW  LR+  F    R     + K  LR++ +TA SGVRGAITL
Sbjct: 316 LYVIAIGVALTCLRFLWVWSTLRVTLFKK--RRDQASDTKPSLRILMLTACSGVRGAITL 373

Query: 377 AGVMSIPLLLKEHTPFPARDLLIFLATGVIICSLLFGSFLLPWLLKDLQLDAEVKRRRAE 436
           AG++++PLL+ + + FPARDLLIFLA GVI+ SLL  S  LP L KD++   E      +
Sbjct: 374 AGILTLPLLMPDGSAFPARDLLIFLAKGVILLSLLSASVALPLLSKDMKFAPE-PALGMD 432

Query: 437 EMMARLRLSEAAVRSIETAQERIGENLDESDLALLMEVSGSLLATYRMRMNAESDSEETQ 496
           E  AR+  +EAA+R I++  +   EN +++      E +  +   YR R++      E  
Sbjct: 433 EGHARVAAAEAAIRHIKSLCDAAPENAEDNGQT---EAAMRVTELYRRRLDYGLSEGEEA 489

Query: 497 RAANRFKQFERELRLEAVRAERLEVHYLRAEQRINDETFLMLINQIDMAETWLLGSLNGP 556
                  + ERELRL A+RAER E+  +    +++D     L+ ++D+ E    G+L   
Sbjct: 490 AHIQLLAEKERELRLSAIRAERDELFQMWLHNKLDDTLHQRLLRELDLIE----GALTRN 545

Query: 557 GQH 559
            QH
Sbjct: 546 VQH 548


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 867,540
Number of extensions: 32477
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 473
Effective length of database: 713,682
Effective search space: 337571586
Effective search space used: 337571586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)