BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3283.p (301 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 74 6e-15 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 69 2e-13 gi|134093718|ref|YP_001098793.1| LysR family transcriptional reg... 62 2e-11 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 60 1e-10 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 55 5e-09 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 74.3 bits (181), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 63/240 (26%), Positives = 103/240 (42%), Gaps = 11/240 (4%) Query: 16 KSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRFQRLAVKLLDMQ 75 K AAE H+ Q T+S I LE+ELGV L +R + +T G + A ++L+ Sbjct: 16 KHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGVQIVAQAERVLEQT 75 Query: 76 RQIRQELGGNSAGPLL--LRIGSIESVVHSWLPAWLQEIRSRYPDFALELTVETSPVLTE 133 I+ E+ + PL+ R+G I ++ LP ++ + R P L L + L E Sbjct: 76 AAIK-EIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQMPLVLQENFTVKLLE 134 Query: 134 QIRRGALDLVFTSTVGSDTA--VRSRLMTPMDMVFVGHRERFGTRVHTLDELAAHDLITF 191 Q+R+G +D + D V+ P + H T D L + ++ Sbjct: 135 QLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSSVTTDNLKSETMLLL 194 Query: 192 QRGSQPHQGLLQLCQEWGVLNPRVHAI------SSISAMVQLVEGGFGVATLPRASVRDL 245 G +L++C E + I SS+ + +V G G+ LP+ASV D+ Sbjct: 195 GNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASGIGITVLPQASVPDM 254 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 69.3 bits (168), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/264 (28%), Positives = 115/264 (43%), Gaps = 26/264 (9%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 + LR + F A RAA +LH+TQ +S I SLE LGV L R + LT A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 G-------QRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIR 113 G QR + L D+ R++ G L + + + +S LP +L+E R Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGASGR------LSLAFVSTADYSVLPPFLREFR 116 Query: 114 SRYPDFALELTVETSPVLTEQIRRGALDLVFTSTVGSDTAVRSRLMTPM---DMVFV--- 167 YP ++L T+ V + + +G +D+ D A P+ ++ Sbjct: 117 ESYPGVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPK 176 Query: 168 GHRERFGTRVHTLDELAAHDLITFQRGSQP--HQGLLQLCQEWGVLNPRV--HAISSISA 223 G + G + L LA LI F R P H +L ++ G L P + AI + Sbjct: 177 GLKALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAG-LTPHIGQEAI-QMQT 234 Query: 224 MVQLVEGGFGVATLPRASVRDLTR 247 ++ LV G G+A +P+ SV +L R Sbjct: 235 IIGLVSAGMGIALVPQ-SVSNLKR 257 >gi|134093718|ref|YP_001098793.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 287 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 13/227 (5%) Query: 1 MNLRFVEAFHWAASLKSITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVA 60 M++ F + S AA +LH+TQ+T+++R+ +LE +LG L R RLT Sbjct: 1 MDIELARTFLYIVRSGSFIAAATRLHVTQTTVTARVQNLESQLGCSLFVRNRAGARLTDD 60 Query: 61 GQRFQRLAVKLLDMQRQIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFA 120 G+RF R A +L+ R++L L +GS S+ + + W ++R P A Sbjct: 61 GERFVRYASQLVQTWDAARRDLPLPDGYGDSLALGSEVSLCNPLMLQWTMQLRRALPSHA 120 Query: 121 LELTVETSPVLTEQIRRGALD--LVFTSTVGSDTAVRSRL----------MTPMDMVFVG 168 + + V L ++ G LD LV+ + V L P V+V Sbjct: 121 IRVEVGDGSSLQSKLEHGLLDAALVYRPVYWTGMQVEQLLEEKLVQIASTKNPEPYVYVD 180 Query: 169 HRERFGTRVHTLDELAAHDLITFQRGSQPHQGLLQLCQEWGVLNPRV 215 F + A ++++F G Q +LQ C G RV Sbjct: 181 WGLDFRKQHDAALPDKAKNVLSFNLGPLALQYILQ-CGGSGYFRTRV 226 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 60.1 bits (144), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 70/135 (51%), Gaps = 2/135 (1%) Query: 17 SITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRFQRLAVKLLDMQR 76 S TRAA+ +H+TQST+S +I LE ++G LL+R + T+ G+R R A ++ + Sbjct: 18 SFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLLRYAHRIAQLMD 77 Query: 77 QIRQELGGNSAGPLLLRIGSIESVVHSWLPAWLQEIRSRYPDFALELTVETSPVLTEQIR 136 + +++ SAG +R+G E V L L Y LE++ S L ++ + Sbjct: 78 EAMEQI-AQSAGKGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVSSGMSHELWQRFQ 136 Query: 137 RGALDLVFTST-VGS 150 RG LDL VGS Sbjct: 137 RGELDLALIKQRVGS 151 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 54.7 bits (130), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 35/276 (12%) Query: 17 SITRAAEKLHITQSTMSSRIASLEEELGVVLLDRREKQFRLTVAGQRFQRLAVKLLDMQR 76 SIT AE+ H++ ++ S+RI +EE LG+ LL R ++ T G+ A L Q Sbjct: 19 SITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPVGKALVHHARIALRQQE 78 Query: 77 QIRQELGGNSAG-PLLLRIGSIESVVHSWLPAWLQEIRSRYPDFALELTVETSPVLTEQI 135 ++R EL + G +RI S + +LP L + +P+ ++L S + + Sbjct: 79 RMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNVNIDLEERLSFEIVSAL 138 Query: 136 RRGALDLVFTSTVGSDTAVRSRLMTPMDMVFVGHRERFG---TRVHTLD--------ELA 184 G +D+ + SD+ S T F H +R R H L E Sbjct: 139 TEGTIDI----GILSDSVDFSGFET-----FPFHDDRLTLVVARDHPLSVRSSIHFAETL 189 Query: 185 AHDLITFQRGSQPHQGLLQLCQEWG-VLNPRVHAISSISAMVQLVEGGFGVATLPRASVR 243 +D I Q GS + L + + G RV + S A+ +++E G+ +P A+ Sbjct: 190 DYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVR-LRSFDAVCRMIERNVGIGVVPEAAAN 248 Query: 244 DLTRRLPL------------RILRCEAPLAALQIHA 267 L + + + +++ C + L IHA Sbjct: 249 RLKKSMDIHTVSILDSWSSRKLIICAQSYSDLPIHA 284 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 524,312 Number of extensions: 20167 Number of successful extensions: 101 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 101 Number of HSP's successfully gapped: 8 Length of query: 301 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 220 Effective length of database: 733,452 Effective search space: 161359440 Effective search space used: 161359440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)