BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3280.p (239 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095895|ref|YP_001100970.1| GntR family transcriptional reg... 74 4e-15 gi|134094688|ref|YP_001099763.1| GntR family transcriptional reg... 72 2e-14 >gi|134095895|ref|YP_001100970.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 247 Score = 74.3 bits (181), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 22/224 (9%) Query: 6 IVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLR 65 + ++ + + V + L +I G+L P +L ERE+ LG+ R +REA++ LA GL+ Sbjct: 19 VERQRLHDAVVEHLQNLIIEGVLAPGMKLN-EREVCERLGISRTPLREAMKVLASEGLID 77 Query: 66 IRQGEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHMPEAELA 125 I G FVS + E+ E EM+ LEAL LAA + AE+A Sbjct: 78 IAPNRGAFVSKMNDNEIWEAFEMM-----SGLEAL----------SGELAAERISPAEIA 122 Query: 126 RLARNVEDEARLL----SDPAAFSAADVEFHEAIIEACDNPFLQSIAGSLYMLGKKSRSI 181 + V EA L+ +D + + + H I EA N L+ I S+ R Sbjct: 123 DI--KVLHEAMLVCRAQNDLPGYYSRNQTIHNKINEAARNSMLRQIYLSINRRLLALRFK 180 Query: 182 TSRIPSTLERSLQDHRDILAALKARDPHKAAEAMRHHLLRVRDA 225 ++ + +R++ +H +++ AL++RD + A +R HLL RD+ Sbjct: 181 SNFQEAKWDRAIHEHDEMIKALESRDGKRLAAILRQHLLDKRDS 224 >gi|134094688|ref|YP_001099763.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 220 Score = 72.4 bits (176), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 14/212 (6%) Query: 9 KSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQ 68 K SE + + + MI G L P L E ELA GV R +REA+ LA +G++ IR Sbjct: 2 KKHSEVLREAIEEMIAVGKLPPGHHLD-ETELAKEFGVSRTPIREALIQLASMGIIVIRP 60 Query: 69 GEGTFVSSLETRELLEPLEMIIDLNPGTLEALFDARLIIETGVAALAATHMPEAELARLA 128 G V+ + ++L+E E++ +L + A AR + G A L ATH+ Sbjct: 61 RRGAIVAEIGPQQLIEMFEVMAELE--AMCARLAARRMSPAGHATLKATHL--------- 109 Query: 129 RNVEDEARLLSDPAAFSAADVEFHEAIIEACDNPFLQSIAGSLYMLGKKSRSITSRIPST 188 +EAR +D A+ + EFH+ I N FL+ A L + R + R+ + Sbjct: 110 --ACEEARDSADSDAYFYKNEEFHQQIYIGSQNSFLEEQARVLQRRLRPYRRLQLRVRNR 167 Query: 189 LERSLQDHRDILAALKARDPHKAAEAMRHHLL 220 ++ S +H ++ A+ AAE +R H++ Sbjct: 168 VQASFDEHGAVVDAIIEGKGELAAELLRQHIM 199 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 399,691 Number of extensions: 14342 Number of successful extensions: 77 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 2 Length of query: 239 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 160 Effective length of database: 740,042 Effective search space: 118406720 Effective search space used: 118406720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)