BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3273.p (381 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 391 e-110 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 206 1e-54 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 195 2e-51 gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 138 4e-34 gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding pro... 128 5e-31 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 391 bits (1004), Expect = e-110, Method: Compositional matrix adjust. Identities = 206/363 (56%), Positives = 255/363 (70%), Gaps = 4/363 (1%) Query: 20 LEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRIL 79 LE + R + V ++S LQ G++G L+G SG GKT++LRA+AG EP G I Sbjct: 17 LESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSIT 76 Query: 80 LDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQIVTQMLD 139 L G+ + E R+IG+VFQD+ALFPHL VA N+GFGLR +A +R+ + +L Sbjct: 77 LGGKEISNAHFTATPETRQIGVVFQDYALFPHLSVADNVGFGLRKLAAPERQARIAALLT 136 Query: 140 LVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDI 199 LVGL G+KFPH+LSGGQQQR+ALARALAPQP LLLLDEPFS+LDV+LRERLA +VRDI Sbjct: 137 LVGLASQGKKFPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDI 196 Query: 200 LKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIGHGVL 259 LK GTTA++VTHDQ EAFA+AD +GVM+ G + QWDS Y LYHRPA RF ADFIG GV Sbjct: 197 LKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYHRPANRFVADFIGLGVF 256 Query: 260 LRGQLQPVTTGASPQIEVQTAAGLLRGIPLQAPS-PSPTQVDVLLRADDVLHDDASPFKA 318 G + T + IE+ + L G+ P+ P QVDVLLRADDV+HDD SP +A Sbjct: 257 TPGIIDQQTQNVN--IELGSLP-LCHGMETCDPNAPDGQQVDVLLRADDVVHDDTSPLQA 313 Query: 319 RVLRKSFRGAQFLYTLALENGQQLLSLVPSHHDHAIGEWIGIRLDVTHLVTFPGAAEGAS 378 V+RK+FRGA FLYTL L +GQ LL+LVPSHHDHA+GE IGIRL+ H+VTF E Sbjct: 314 EVVRKAFRGADFLYTLKLPSGQLLLALVPSHHDHALGERIGIRLEADHVVTFTKENEAPG 373 Query: 379 VQG 381 + G Sbjct: 374 MSG 376 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 206 bits (524), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 113/252 (44%), Positives = 159/252 (63%), Gaps = 10/252 (3%) Query: 19 FLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRI 78 LE+ +L+ R+ VD +SL ++ GE L+GPSG GKT+LLR +AG + AG+I Sbjct: 3 LLEIRNLTRRFGDNT--VVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKI 60 Query: 79 LLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQREQI---VT 135 LLDG L G V E R + VFQ++ALFPH+ VA NI F L MA T + +I V Sbjct: 61 LLDGVDLTG----VPPEQRVVRTVFQNYALFPHMTVAGNIAFPLE-MANTPKSEIKQKVD 115 Query: 136 QMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHD 195 + L+ V L ++PH+LSGGQ+QR+++ARAL +P+LLLLDEP S+LD +LRE++ + Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 196 VRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFIG 255 + ++ K G T + VTHDQ EA A++ + VM G +EQ D P +Y P +RF ADFIG Sbjct: 176 LINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIG 235 Query: 256 HGVLLRGQLQPV 267 L G + + Sbjct: 236 TCNLFDGTVTQI 247 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 195 bits (496), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 119/287 (41%), Positives = 169/287 (58%), Gaps = 25/287 (8%) Query: 18 MFLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGR 77 M +EV++++ ++ A++ VSL GEL AL+GPSG GKT+LLR +AGLE G+ Sbjct: 1 MSIEVKNINKKFGNFV--ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQ 58 Query: 78 ILLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFGLRGMARTQR------E 131 +LLDG+ VR R++G VFQ +ALF H+ V NI FGLR R + Sbjct: 59 VLLDGEDASARHVR----ERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIK 114 Query: 132 QIVTQMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRER 191 + VT++L+LV L ++P QLSGGQ+QRIALARALA +PR+LLLDEPF +LD ++R+ Sbjct: 115 EKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKE 174 Query: 192 LAHDVRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAA 251 L +R + T++ VTHDQ EA VAD + +M G +EQ +P +Y+ PA+ F Sbjct: 175 LRRWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVY 234 Query: 252 DFIGHGVLLRGQLQPVTTGASPQIEVQTAAGLLRGIPLQAPSPSPTQ 298 F+G+ L RG++ +S GI AP + TQ Sbjct: 235 GFLGNVNLFRGRVHEGVLQSS-------------GIAFDAPDHAKTQ 268 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 138 bits (348), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 6/239 (2%) Query: 19 FLEVEHLSIRYPRTATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRI 78 +E++++S Y + ++ + + G++ + GPSGSGK++L++ V GLEP Q G I Sbjct: 1 MIEMKNVSKWY--GSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSI 58 Query: 79 LLDGQLLEGDGVRVAAEARRIGMVFQDFALFPHLDVAANIGFG-LRGMARTQRE--QIVT 135 +DG + + A RIGMVFQ+F LFPHL + N+ G +R + R++ E + Sbjct: 59 TVDGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGL 118 Query: 136 QMLDLVGLPEAGRKFPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHD 195 + LD VGL KFP QLSGGQQQR+A+ARALA P +L DEP S+LD E+ + D Sbjct: 119 KYLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVL-D 177 Query: 196 VRDILKRTGTTALMVTHDQLEAFAVADVVGVMRHGRLEQWDSPYALYHRPATRFAADFI 254 V L + G T ++VTH+ A VA+ V M G + + + + + A DF+ Sbjct: 178 VMVGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFL 236 >gi|134094842|ref|YP_001099917.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 434 Score = 128 bits (321), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/201 (41%), Positives = 116/201 (57%), Gaps = 12/201 (5%) Query: 32 TATAAVDAVSLRLQPGELGALIGPSGSGKTSLLRAVAGLEPAQAGRILLDGQLLEGDGVR 91 T + ++ V+ L GE+ AL+G SGSGK++LLR +AGL A G GQ Sbjct: 22 TPCSVLENVNFALAEGEIVALLGKSGSGKSTLLRIMAGLIAADQGTAKYRGQ-------E 74 Query: 92 VAAEARRIGMVFQDFALFPHLDVAANIGFGL--RGMARTQREQIVTQMLDLVGLPEAGRK 149 + + I MVFQ FALFP L V N+ GL +GMA +RE+ MLDL+GL G Sbjct: 75 IYSPVSGIAMVFQSFALFPWLTVQQNVELGLEAQGMAPDEREKRADAMLDLIGLAGFGGA 134 Query: 150 FPHQLSGGQQQRIALARALAPQPRLLLLDEPFSSLDVELRERLAHDVRDIL--KRTGTTA 207 P +LSGG +QR+ +AR L P +LL+DE FS+LDV E L D+ ++ KR T Sbjct: 135 LPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEKRIPTKG 194 Query: 208 -LMVTHDQLEAFAVADVVGVM 227 L+V+H+ EA +AD + V+ Sbjct: 195 ILIVSHNIEEAVMMADRILVL 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 719,312 Number of extensions: 30349 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 47 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 49 Length of query: 381 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 298 Effective length of database: 726,862 Effective search space: 216604876 Effective search space used: 216604876 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)