BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3272.p
         (555 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094056|ref|YP_001099131.1| iron ABC transporter membrane p...   384   e-108

>gi|134094056|ref|YP_001099131.1| iron ABC transporter membrane
           protein permease [Herminiimonas arsenicoxydans]
          Length = 552

 Score =  384 bits (985), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/542 (45%), Positives = 340/542 (62%), Gaps = 29/542 (5%)

Query: 11  IALPLLGILAAWLGLDA--AGVDSLRQQAQTVLPGYLATSGWLALLVPLGVVLVGGATAV 68
           + +P+ G+L+         A   +      TVLP Y+  S  +A++V +    +G   A 
Sbjct: 31  VGVPIAGVLSNLFSHAELNASASTFSHLWATVLPEYIVNSAIIAVIVAVLTATIGIGCAW 90

Query: 69  TVSLFEFRGRRWLSWALLLPMAMPAYVSAYAYTDFLQYAGLVQSTLR---GWFPG--WRM 123
            V++F+F G+++  WAL+LP+AMPAYV AYAYTDFLQ+ G +Q+ LR   GW  G  W  
Sbjct: 91  LVAVFDFPGKKFFEWALILPLAMPAYVVAYAYTDFLQFTGPLQTGLRTQFGWQGGDYWFP 150

Query: 124 DVRGLPGAICMFVFTLYPYAYLLARNALCERGTHLMEAARMLGTPLSARIVRVALPLARP 183
            +R + GA  +F   LYPY YLL RNA  ER   + +AAR LG       ++V+LPLARP
Sbjct: 151 QIRSVGGAGLLFALVLYPYVYLLVRNAFIERSPRMWDAARTLGAGPWQAFLQVSLPLARP 210

Query: 184 ALAAGAALALMETLADYGVSAYFGLTTFTTGIYKAWVVLDDRLAAAQYASLLLLFVALLL 243
           A AAG ALALMETLADYG  AYFG+ T TTGIYK+W +  DR AAAQ A++LL+ V  L+
Sbjct: 211 AAAAGIALALMETLADYGAVAYFGVPTLTTGIYKSWYIFSDRTAAAQIAAVLLMVVMGLM 270

Query: 244 WLERREQGRMRFAASRGGRGSDGAEARLPRLSRGPTLLAWLVCALPVVLGFLLPVAILLH 303
            LE++ +GR R+ A  G   +  A     R + G +L     CALPV+ GF +P+ ILL 
Sbjct: 271 LLEQKSRGRARYYAVGGRSTAQAATVLTGRHAWGASLF----CALPVLFGFFVPLIILLR 326

Query: 304 LWWGELGRAPAGLDIAAPAFDLG-RYAGWVWNSFRFGGLAAFIAIGLALALCFALRAGGL 362
           L   E             A   G RY GW+ N+   GG+ A IA+ + + + +A R    
Sbjct: 327 LLLNE------------DALSFGTRYIGWLENTIVLGGITALIAVVICVLMAYAARVTK- 373

Query: 363 PRLQGALLRLTARLAGMGYAIPGSVIAVGILLPVAWLQALWPAAGLGVLLTATSLGVIYA 422
            R Q     +  R+  MGYAIPG+VIAVGIL+P++++ A     G+ ++L+ + + ++YA
Sbjct: 374 SRAQA----ICNRIVSMGYAIPGAVIAVGILIPLSYIDAWNSEHGIALVLSGSVVALVYA 429

Query: 423 YLVRFTAVAVQSVESGYTRIPASLDEAARTLGSSRAVIAWRLHMPLLWRSLAVAALMVFV 482
           YLVRF AV+ QSV++G T+I  ++D +AR+LG     +   +H+PLLWRS+  A L+VFV
Sbjct: 430 YLVRFLAVSFQSVQAGLTKITPAMDASARSLGHGIGSMLRHIHVPLLWRSVLTAGLLVFV 489

Query: 483 DVVKELPATLLLRPFDTDTLAVIAHNLARDERLGEAALPALSIVLVGLAPVLLVMRALDG 542
           DVVKELPATL +RPF+ DTLAVI H LA DERLGEAALPAL+IVL+ + PV+++ RA+  
Sbjct: 490 DVVKELPATLTIRPFNFDTLAVITHQLASDERLGEAALPALTIVLIAIVPVVILARAIAR 549

Query: 543 RR 544
            R
Sbjct: 550 TR 551


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.141    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 829,668
Number of extensions: 29843
Number of successful extensions: 200
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 4
Length of query: 555
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 469
Effective length of database: 716,977
Effective search space: 336262213
Effective search space used: 336262213
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)