BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3269.p (695 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [... 948 0.0 gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 397 e-111 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 392 e-110 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 383 e-107 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 367 e-103 >gi|134094472|ref|YP_001099547.1| hypothetical protein HEAR1245 [Herminiimonas arsenicoxydans] Length = 715 Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/684 (67%), Positives = 563/684 (82%), Gaps = 3/684 (0%) Query: 4 AHYDKLLVVVSLLVAILASYTALDMAERISTSNHLYSRAARFWLAGGAIAMGVGIWSMHF 63 AHYD LLV++SLLVAILASYTALDMAERI+ + H +AA WLAGGA AMGVGIWSMHF Sbjct: 8 AHYDTLLVLISLLVAILASYTALDMAERINATQH---KAAALWLAGGAFAMGVGIWSMHF 64 Query: 64 IGMLAFRLPIALGYDAWITLVSLLIAVLTSGFALWIVTRAELPLRRLLGSAVLMGSGIVA 123 IGML+FRLPIALGYD +T+ SL IA++ SGFALW +++ LP+ +L SA+LMG I A Sbjct: 65 IGMLSFRLPIALGYDLTLTITSLAIAIVASGFALWRISQPTLPVMQLSVSALLMGVAIAA 124 Query: 124 MHYTGMAAMRMQPGIDYDLVLFVGSVIIAVVTSATALWIAFSLRRNTPHVRVARAGASVV 183 MHYTGMAA+RM PGI+Y+ +LF S++IA+ S ALWIAF+LR+N PH++ ARA A+VV Sbjct: 125 MHYTGMAALRMTPGIEYNPLLFSLSILIAIAASGAALWIAFTLRKNRPHMKRARAMAAVV 184 Query: 184 MGLAIVGMHYTGMAAASFPRGAVCLAAREGVGSGWLAILIIVVTLAVLTIALLTSVLDAR 243 MG+AI+GMHYTGMAAA+FP G++C AA EG+ GWLA+++I+VTL+VL IALLTSVLD R Sbjct: 185 MGVAIIGMHYTGMAAANFPLGSICTAASEGIPPGWLALVVIIVTLSVLAIALLTSVLDTR 244 Query: 244 LESRTAKLARSLAEANEELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFM 303 LES+T+ LA+SLA AN+ELT+ L D+LTKLPNRTLLEDRL Q +HKA RT FALMF+ Sbjct: 245 LESQTSLLAKSLAVANQELTRQALQDNLTKLPNRTLLEDRLNQILHKAERTHTRFALMFI 304 Query: 304 DLDGFKAINDSLGHHVGDRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEGAMP 363 DLDGFKAINDSLGHH+GD LL+EVA+R+ +RAQDT ARLGGDEFV+L+E+ PE A Sbjct: 305 DLDGFKAINDSLGHHIGDMLLIEVAQRIRGSIRAQDTAARLGGDEFVLLIEVTEPEDAAS 364 Query: 364 VAEKLVEVVNQAFTLAQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGY 423 VA+KL ++NQ F + L VSASVGI IYP+DG T HDL++NADAAMYHTK GRNGY Sbjct: 365 VADKLCNIINQPFEIDFHTLGVSASVGITIYPDDGHTPHDLLVNADAAMYHTKSTGRNGY 424 Query: 424 HFFEPSMNANAHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRG 483 HFFE SMNANAH+QLQ +Q+LR+A+ERK+ +L YQPKF P+G V+GAEALLRWQHP RG Sbjct: 425 HFFEASMNANAHNQLQVIQDLRLALERKEFKLHYQPKFNTPNGIVVGAEALLRWQHPTRG 484 Query: 484 LVGPDEFIGLAERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLV 543 ++ PD+FI LAE++GLI+PIG WVLDEACRQMR W G HWK+AVNLSA+QF++ HL+ Sbjct: 485 MIAPDDFIALAEKTGLIVPIGEWVLDEACRQMRIWHDEGNQHWKVAVNLSAVQFSNDHLI 544 Query: 544 EVVRTALDKHQLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLL 603 E+V+T L ++ P L LEVTESTAMHD EASL L K+A LG++I+IDDFGTGYSSLL Sbjct: 545 ELVQTTLARNNFPASGLILEVTESTAMHDVEASLTILDKLAGLGIDISIDDFGTGYSSLL 604 Query: 604 YLKRLPAHELKIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAA 663 YLKRLPA ELKIDRGF+RDL++GS D++IV+AI+ALGR+L L IVAEGVETE QQ +L Sbjct: 605 YLKRLPATELKIDRGFIRDLAQGSNDSSIVAAIIALGRSLNLHIVAEGVETEEQQAYLRV 664 Query: 664 AGCHALQGYLRGRPMAPDLFLQTM 687 GC A+QGYL GRPMAPD F+ + Sbjct: 665 LGCDAMQGYLMGRPMAPDQFMDAI 688 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 397 bits (1019), Expect = e-111, Method: Compositional matrix adjust. Identities = 202/410 (49%), Positives = 268/410 (65%) Query: 269 DHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVA 328 D LT LPNR LL++R +A+ A Q A+MF+DLD FK IND+LGH++GD LLVE+A Sbjct: 435 DVLTGLPNRALLDERAQRALRLAEEDQATLAVMFLDLDHFKNINDTLGHNLGDTLLVELA 494 Query: 329 RRLSSIMRAQDTVARLGGDEFVILVELERPEGAMPVAEKLVEVVNQAFTLAQQELRVSAS 388 +RL +++R DT++RLGGDEFV+L+ E A +A++L+ +N+ + + EL V AS Sbjct: 495 QRLRAVLRRDDTLSRLGGDEFVLLLPGANRESAKKIAQELMRAINEPYRIGSHELNVMAS 554 Query: 389 VGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQLQWLQELRVAV 448 +GIA+YP DG L NAD AMY K+ GRN Y F M A + LQ L LR A+ Sbjct: 555 IGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYRSFTQEMQAYSTRYLQVLNALRQAI 614 Query: 449 ERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSGLIIPIGAWVL 508 ++QL + YQP+ L G V+GAEALLRW HP+ G + P EFI +AE SGLI+ IG WVL Sbjct: 615 AQEQLHVHYQPQISLISGDVIGAEALLRWHHPELGNISPAEFIPIAEESGLILQIGEWVL 674 Query: 509 DEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPHCLTLEVTEST 568 A Q ++W LG IAVNLSA+QF L +V L + PP L LE+TE Sbjct: 675 RVAVAQAKKWHQLGLDKLIIAVNLSAVQFRHAGLPNLVMQILKEEDFPPQYLELELTEGV 734 Query: 569 AMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRGFVRDLSEGSE 628 AMHD + ++ + + E GV ++IDDFGTGYSSL YLK+ A++LKID+ FVRD+S +E Sbjct: 735 AMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSLSYLKQFKAYKLKIDQSFVRDISTDAE 794 Query: 629 DAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPM 678 D AIVSAI+ + + L L+ +AEGVET QQ FL GCH QGY +P+ Sbjct: 795 DKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLREEGCHEAQGYHYSKPL 844 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 392 bits (1006), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/434 (44%), Positives = 283/434 (65%), Gaps = 3/434 (0%) Query: 261 ELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVG 320 EL D LT L NR+L+ DRL QA+ A R ++F+DLD FK +ND+LGH G Sbjct: 504 ELEFQTNRDALTGLANRSLMRDRLGQAVSYAHRYGHPIWILFVDLDRFKFVNDTLGHQAG 563 Query: 321 DRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEGAMP--VAEKLVEVVNQAFTL 378 D LL V+ RL + +R DTVAR+GGDEFV+++ ER + + + ++++E + Q T+ Sbjct: 564 DILLKAVSARLQAAVRDTDTVARMGGDEFVLILP-ERTDAGLSTGIMQRIMESIAQPLTI 622 Query: 379 AQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQL 438 E +S S+G+A+YP DG T +L+ +AD AMY K GRN + F+ P+MN A +L Sbjct: 623 EGHEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNFQFYTPAMNERALERL 682 Query: 439 QWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSG 498 +LR A+ER++ L YQP+ L GQ++G EAL+RWQHP+ G+V P FIGLAE +G Sbjct: 683 HIEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELGMVPPVRFIGLAEENG 742 Query: 499 LIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPH 558 LI+PIGAWV+ AC Q + W G+ H +++VNLSA QFA LV+ + +L + L P Sbjct: 743 LIVPIGAWVIRTACLQNKVWQESGFGHLRMSVNLSARQFAQEDLVDSIAVSLREANLAPE 802 Query: 559 CLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRG 618 L +E+TES M D + ++ L+++ LGV+++IDDFGTGYSSL YLKR P LKIDR Sbjct: 803 YLEIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRS 862 Query: 619 FVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPM 678 FV D++ +DAAIV+++++L +LRL ++AEGVETE Q +L C +QGY RP+ Sbjct: 863 FVNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLREHNCDQIQGYFFSRPV 922 Query: 679 APDLFLQTMREQQK 692 + F +++ ++ Sbjct: 923 TAEAFSVMLKDGKR 936 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 383 bits (984), Expect = e-107, Method: Compositional matrix adjust. Identities = 208/432 (48%), Positives = 269/432 (62%), Gaps = 4/432 (0%) Query: 253 RSLAEANEELTQMVLHDHLTKLPNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAIN 312 R L EA E+ HD LT LPNRTLL DR+ QA+ +AR A+ F+DLD FK IN Sbjct: 276 RKLHEA--EIQFQATHDALTGLPNRTLLYDRMQQAVLHSARYGNLTAIAFLDLDQFKFIN 333 Query: 313 DSLGHHVGDRLLVEVARRLSSIMRAQDTVARLGGDEFVILVELERPEGAMP-VAEKLVEV 371 DSLGH VGD LL A+RL+S +R DTVAR GGDEFV+L+ + E ++ ++++ Sbjct: 334 DSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTSQPSEESITHTMQRVLHE 393 Query: 372 VNQAFTLAQQELRVSASVGIAIYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMN 431 V Q + E R++ SVG+ + P+DG L+ NAD+AMY K GRN + +F MN Sbjct: 394 VAQPWMANGLEFRITCSVGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMN 453 Query: 432 ANAHHQLQWLQELRVAVERKQLRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFI 491 A +L L LR A+ + L YQPK L +G ++GAEAL+RW + G+V P FI Sbjct: 454 DTATDRLALLNRLRQAIPNHEFVLHYQPKINLANGDIIGAEALIRWNSAE-GMVSPGSFI 512 Query: 492 GLAERSGLIIPIGAWVLDEACRQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALD 551 LAE +GLIIPIG WVL+ ACRQ R W GYA I+VNLS+ Q A +VE V L Sbjct: 513 PLAEETGLIIPIGVWVLETACRQNRAWQLAGYAPITISVNLSSRQLARGDIVEQVEQVLA 572 Query: 552 KHQLPPHCLTLEVTESTAMHDTEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAH 611 + L L LE+TES D E S L ++ LGV+I++DDFGTGYSSL YLKR P Sbjct: 573 ETGLEAQYLELEITESVMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVD 632 Query: 612 ELKIDRGFVRDLSEGSEDAAIVSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQG 671 LKID+ FVRDL+ + AAIV AI++LG L L ++AEG+ETE Q QFL + C+ QG Sbjct: 633 TLKIDQSFVRDLATSQDSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQG 692 Query: 672 YLRGRPMAPDLF 683 YL RP++ F Sbjct: 693 YLMSRPVSHQHF 704 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 367 bits (943), Expect = e-103, Method: Compositional matrix adjust. Identities = 203/479 (42%), Positives = 295/479 (61%), Gaps = 10/479 (2%) Query: 219 LAILIIVVTLAVLTIA----LLTSVLDARLESRTAKLARSLAEANEELTQMVLHDHLTKL 274 ++I ++ + +L IA L +VL A + + +++ E + L Q HD+LT + Sbjct: 118 VSIAVVFLLCGLLMIASRQRRLYNVLTASEQEKLNLISQLEQEKSRALLQAS-HDYLTGV 176 Query: 275 PNRTLLEDRLTQAIHKAARTQGHFALMFMDLDGFKAINDSLGHHVGDRLLVEVARRLSSI 334 PNR L + + +A R++ +AL F+DLD FK IND+LGH VGD LL VARRL Sbjct: 177 PNRRLFYEMAATELARAKRSRKLYALFFLDLDKFKLINDTLGHAVGDLLLQGVARRLRES 236 Query: 335 MRAQDTVARLGGDEFVILV-ELERPEGAMPVAEKLVEVVNQAF-TLAQQELRVSASVGIA 392 +R D +ARLGGDEFVILV E+ VA KLV+VV F L ++ VS S+GIA Sbjct: 237 LREYDLLARLGGDEFVILVSEMASESDIARVAAKLVDVVRDPFLDLGGNDIDVSPSIGIA 296 Query: 393 IYPEDGATRHDLVINADAAMYHTKRAGRNGYHFFEPSMNANAHHQLQWLQELRVAVERKQ 452 +YP DG L+++AD AMY K AG Y FF+ S+NA++ + + L + A++ + Sbjct: 297 LYPRDGQDVETLLMHADLAMYSAKSAGAATYRFFDTSLNASSARETELLSRFKRAIKDDE 356 Query: 453 LRLVYQPKFGLPDGQVLGAEALLRWQHPQRGLVGPDEFIGLAERSGLIIPIGAWVLDEAC 512 L YQP+ L + VLG EAL+RW HP+ GL+ P++FI LAE + LI+P+G WV+D AC Sbjct: 357 FCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIYPNDFISLAENNDLIVPLGNWVVDAAC 416 Query: 513 RQMRQWLTLGYAHWKIAVNLSALQFADPHLVEVVRTALDKHQLPPHCLTLEVTESTAMHD 572 RQ+ W G +A+N+S+ Q D L+E V T L K+Q+ P L +EVTES + D Sbjct: 417 RQLAVWRGQGLPIVPVAINVSSRQLKDDTLLETVMTTLAKYQIAPEMLEIEVTESCFIED 476 Query: 573 TEASLQTLQKIAELGVEIAIDDFGTGYSSLLYLKRLPAHELKIDRGFVRDLSEGSEDAAI 632 +A+ Q L+++ + G++IA+DD+GTG+S L LK LP + +KIDR F+RD+ + DA I Sbjct: 477 FDAASQVLEQLQKNGIKIALDDYGTGFSGLKNLKILPIYAIKIDRSFIRDIRNDNSDAVI 536 Query: 633 VSAIVALGRALRLRIVAEGVETEGQQQFLAAAGCHALQGYLRGRPMAP---DLFLQTMR 688 V++ ++L L L++VAEGVE++ Q L AGC +QG+ RP+A D LQ R Sbjct: 537 VASTISLAHNLGLQVVAEGVESKEQLVHLKTAGCDQVQGFYFQRPVAATEIDTLLQRGR 595 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.324 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,262,757 Number of extensions: 52226 Number of successful extensions: 328 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 35 Length of query: 695 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 607 Effective length of database: 710,387 Effective search space: 431204909 Effective search space used: 431204909 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)