BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3267.p
         (130 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094433|ref|YP_001099508.1| hypothetical protein HEAR1204 [...   152   5e-39

>gi|134094433|ref|YP_001099508.1| hypothetical protein HEAR1204
           [Herminiimonas arsenicoxydans]
          Length = 130

 Score =  152 bits (384), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 70/112 (62%), Positives = 90/112 (80%), Gaps = 1/112 (0%)

Query: 2   NNSARYFHLGAGSSLVALILLCLAWELMLAPLRPGGSWMVLKVVPLLLPLRGVLKRDVYT 61
             S +  HLGA  SL+ALI+LC+AWE +LAP+RPGGSW+VLKV+PLL+PLRG+LKRD+YT
Sbjct: 3   TQSQKIIHLGAVCSLIALIVLCIAWEWLLAPVRPGGSWLVLKVIPLLIPLRGILKRDLYT 62

Query: 62  LQWSSMLILVYLAEGLVRATSDTARTSVMLAWVEVALTTLYFVCALAYLHPF 113
           +QWSSMLIL+Y AEG+VR  SD+   S  L W+EVAL   +F+C +AYL P+
Sbjct: 63  MQWSSMLILLYFAEGIVRGMSDSG-LSATLGWIEVALVLGFFICVIAYLRPY 113


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 197,209
Number of extensions: 5352
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 58
Effective length of database: 763,107
Effective search space: 44260206
Effective search space used: 44260206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 123 (52.0 bits)