BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3266.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094434|ref|YP_001099509.1| tryptophan repressor binding pr...   291   2e-80

>gi|134094434|ref|YP_001099509.1| tryptophan repressor binding
           protein [Herminiimonas arsenicoxydans]
          Length = 192

 Score =  291 bits (744), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 150/190 (78%), Positives = 168/190 (88%)

Query: 19  LYYSRHGATRKLAELIAQGVESVPGCDARLRTVPAVSTVTEAVEPEVPGSGAPYVEASDL 78
           +YYSRHG+TRKLAELI QG++ V GC+ARLRTVPAVSTVTEA  P++P  GAPYVE  DL
Sbjct: 1   MYYSRHGSTRKLAELIGQGIDGVAGCEARLRTVPAVSTVTEATAPDIPTEGAPYVELRDL 60

Query: 79  QDCAGLALGSPTRFGNMAAAMKYFWDGTSPQWLSGALAGKPACVFTSTGSLHGGQESTLL 138
           ++CA LALGSPTRFGNMAA MKYFWDGTS QWLSG LAGKPACVFTSTGSLHGGQE+TLL
Sbjct: 61  EECAALALGSPTRFGNMAAPMKYFWDGTSSQWLSGTLAGKPACVFTSTGSLHGGQETTLL 120

Query: 139 SMMLPLLHHGMLLLGLPYSHPELMNTTSGGTPYGASHWAGVNGNQPLSDDSRTLAIALGK 198
           SMMLPLLHHGMLLLG+PY+  ELM T+SGGTPYGASHW+GV+G Q +S D+R LAIALG+
Sbjct: 121 SMMLPLLHHGMLLLGIPYTQAELMTTSSGGTPYGASHWSGVSGTQAISADTRALAIALGQ 180

Query: 199 RLAENAIKLR 208
           RLA  AIKLR
Sbjct: 181 RLAHTAIKLR 190


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.130    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 383,780
Number of extensions: 14601
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)