BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3264.p
         (106 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094436|ref|YP_001099511.1| putative transmembrane protein ...   115   4e-28

>gi|134094436|ref|YP_001099511.1| putative transmembrane protein
           [Herminiimonas arsenicoxydans]
          Length = 104

 Score =  115 bits (289), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 1/104 (0%)

Query: 3   ATLPDRHYASFSEFYPSYLSEHTHRVNRQLHFLGSTLALLSLLLLLLTRQWWWLAVALLC 62
           + +  +   SF+EFY  YLS+H +R  RQLHF GSTL++L L +L LT   WWL  A+L 
Sbjct: 2   SVIAHKGQQSFAEFYTHYLSDHGNRHARQLHFFGSTLSILCLAILALTGNAWWLLAAVLA 61

Query: 63  GYGLAWVGHFMVEKNQPATFRHPLYSFMGDWVMYWQMLTGQVSF 106
            YG AW+GH   EKN P  F+ P+YSFM  W+MYWQML+GQ+SF
Sbjct: 62  FYGCAWIGHVKFEKNLP-LFKQPVYSFMAAWLMYWQMLSGQISF 104


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.138    0.482 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 191,356
Number of extensions: 5572
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 106
Length of database: 1,000,347
Length adjustment: 69
Effective length of query: 37
Effective length of database: 772,992
Effective search space: 28600704
Effective search space used: 28600704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 122 (51.6 bits)