BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3260.p
         (273 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094443|ref|YP_001099518.1| putative signal peptide [Hermin...   391   e-110
gi|134095784|ref|YP_001100859.1| M48 family peptidase [Herminiim...    69   2e-13
gi|134094223|ref|YP_001099298.1| hypothetical protein HEAR0989 [...    57   9e-10

>gi|134094443|ref|YP_001099518.1| putative signal peptide
           [Herminiimonas arsenicoxydans]
          Length = 276

 Score =  391 bits (1005), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 179/255 (70%), Positives = 218/255 (85%)

Query: 19  LVACETVQTTQGGAVGIDRKQQMLVSSAEMEAASSKEYAQVLAEARSKGQLNRNTAQVQR 78
           L ACETVQTTQ G VG+DR+Q+M VS+ E++ A+ K+YA ++AE + K  LNRN AQV R
Sbjct: 22  LAACETVQTTQSGLVGVDRQQRMAVSAQELDQAAGKQYATLIAEQKQKNALNRNAAQVTR 81

Query: 79  VRAIANRLIPQTGVFRPDALKWNWEVNVLSSDETNAWCMPGGKIAVYTGLIDKLKITDDE 138
           VR+IAN+LI QT VFRPDA +W WEVNVL+S E NAWCMPGGKIAVYTGLI+KL++TDDE
Sbjct: 82  VRSIANKLIAQTSVFRPDAPRWQWEVNVLTSPEVNAWCMPGGKIAVYTGLIEKLQVTDDE 141

Query: 139 LAAVMGHEIAHALREHARERASQQVVANSAISIGAALLGLGDVGKQGGQYLYMGLMGLPN 198
           LAAV+GHEI+HALREHARERAS+Q+VA S ISIG+ALLG+G +G++G +Y YMGL+GLPN
Sbjct: 142 LAAVIGHEISHALREHARERASEQIVAGSVISIGSALLGVGSLGQKGAEYTYMGLVGLPN 201

Query: 199 SRANETEADRIGVELAARGGYDPKAAVTLWQKMASLGGDEPIKFMSTHPSSSERIADLTV 258
           SR++ETEADRIGVELAAR GYDP+AA+TLWQKM  +GG  P  F+STHPSS++R +DLTV
Sbjct: 202 SRSHETEADRIGVELAARAGYDPRAAITLWQKMGQVGGSAPPTFLSTHPSSADRSSDLTV 261

Query: 259 YAQRVEPLYQQTRKR 273
           YAQRV PLY Q + R
Sbjct: 262 YAQRVMPLYLQAKNR 276


>gi|134095784|ref|YP_001100859.1| M48 family peptidase
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 68.9 bits (167), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 18/178 (10%)

Query: 94  RPDA---LKWNWEVNVLSSDETNAWCMPGGKIAVYTGLIDKLKITDDELAAVMGHEIAHA 150
           RP+A    ++++    +     NA+ +PGG I V++ L+   +  + ELA+VM HEI H 
Sbjct: 40  RPEARGETQYDFFFFAVRDPMLNAFALPGGFIGVHSALVLAAQ-NESELASVMAHEIGHV 98

Query: 151 LREH-ARERASQQVVANSAISIGAALLG--LGDVGKQGGQYLYMGLMGLP------NSRA 201
            + H AR    Q+   +  I + A +LG          G  + MG  GL        SR 
Sbjct: 99  AQRHIARMLGKQK--QDMLIPLAAMVLGALTATASPDAGIAMMMGGQGLAIQRQLNFSRD 156

Query: 202 NETEADRIGVELAARGGYDPKAAVTLW---QKMASLGGDEPIKFMSTHPSSSERIADL 256
            E EADR+G+++    G++    +  +   Q+ +    D    ++ +HP ++ERIAD+
Sbjct: 157 AEREADRVGLDIMREAGFETSGMINFFGRLQQASRNYTDSAPPYLRSHPMTTERIADI 214


>gi|134094223|ref|YP_001099298.1| hypothetical protein HEAR0989
           [Herminiimonas arsenicoxydans]
          Length = 327

 Score = 57.0 bits (136), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 113 NAWCMPGGKIAVYTGLIDKLKITDDELAAVMGHEIAHALREHARERASQQVVANSAISIG 172
           NA+ +P G+I +   L+ KL   D+++  V+ HE+ H    H   R    +V +SAI   
Sbjct: 188 NAFALPSGQIILTDELV-KLLDNDEQIMGVLAHELGHLHERHLMRR----IVQSSAIGAV 242

Query: 173 AALLGLGDVGKQGGQYLYMGLMGLPNSRANETEADRIGVELAARGGYDPKAAVTLWQKMA 232
           A ++  GDV         + ++ +  SR  E EAD   + +    G         ++KM 
Sbjct: 243 ATVI-FGDVSAIIANIPTL-MLDMKYSRDAEREADDYAIAMMKANGISLSQLARGFEKMQ 300

Query: 233 SLGGDEPIKFMSTHPSSSERIADL 256
           +    EP  ++S+HPS++ERIA +
Sbjct: 301 T-QEQEPSPYLSSHPSTTERIAHI 323


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 390,819
Number of extensions: 12793
Number of successful extensions: 54
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 3
Length of query: 273
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 193
Effective length of database: 736,747
Effective search space: 142192171
Effective search space used: 142192171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)