BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3258.p
         (215 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094445|ref|YP_001099520.1| isopropylmalate isomerase small...   390   e-110
gi|134094019|ref|YP_001099094.1| 3-isopropylmalate dehydratase [...   158   2e-40

>gi|134094445|ref|YP_001099520.1| isopropylmalate isomerase small
           subunit [Herminiimonas arsenicoxydans]
          Length = 215

 Score =  390 bits (1001), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 181/215 (84%), Positives = 196/215 (91%)

Query: 1   MNKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSK 60
           M KF + +GLVAPLDRANVDTDAIIPKQFLKSIKR+GFGPNLFDEWRYLD GEPG DN+ 
Sbjct: 1   MEKFNILDGLVAPLDRANVDTDAIIPKQFLKSIKRTGFGPNLFDEWRYLDQGEPGKDNTN 60

Query: 61  RPLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNC 120
           RPLNPDFVLNQ RYQG+ ILL+RKNFGCGSSREHAPWAL QYGFRA++APSFADIFFNNC
Sbjct: 61  RPLNPDFVLNQPRYQGAQILLARKNFGCGSSREHAPWALSQYGFRAIVAPSFADIFFNNC 120

Query: 121 YKNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCL 180
           YKNGLLP+ LTE QVDHLFNEVKAFPG+ LVIDLEKQI++T+NGS  YPFDI  FRKYCL
Sbjct: 121 YKNGLLPVTLTEAQVDHLFNEVKAFPGFHLVIDLEKQIIATSNGSVAYPFDIDAFRKYCL 180

Query: 181 LNGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNTI 215
           LNGFDDIGLTL+KAD IRAYEE+HL  QPWLSNTI
Sbjct: 181 LNGFDDIGLTLQKADKIRAYEERHLAAQPWLSNTI 215


>gi|134094019|ref|YP_001099094.1| 3-isopropylmalate dehydratase
           [Herminiimonas arsenicoxydans]
          Length = 212

 Score =  158 bits (399), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/213 (39%), Positives = 121/213 (56%), Gaps = 12/213 (5%)

Query: 2   NKFIVHEGLVAPLDRANVDTDAIIPKQFLKSIKRSGFGPNLFDEWRYLDHGEPGMDNSKR 61
            K  +  G+ APL +AN+DTD I+PKQFL+ I + G    L  + R+   G         
Sbjct: 3   TKTTLIAGIAAPLAQANLDTDQIMPKQFLRGIDKQGLAAGLLYDLRFYPDGRA------- 55

Query: 62  PLNPDFVLNQERYQGSSILLSRKNFGCGSSREHAPWALDQYGFRAVIAPSFADIFFNNCY 121
              PDF+LN   Y+ ++IL+   NFGCGSSREHA W + Q+G +AVIA SF +IF++N  
Sbjct: 56  --RPDFILNLPEYKNATILVGGANFGCGSSREHAVWGMQQFGIQAVIASSFGEIFYSNAM 113

Query: 122 KNGLLPIVLTEQQVDHLFNEVKAFPGYRLVIDLEKQIVSTTNGSQVYPFDISEFRKYCLL 181
            NGLL ++L ++ ++ L +     P  RL ID+EK  VS  NG     F +SE     +L
Sbjct: 114 NNGLLLVMLPDEAIEQLMDGAGTDP-VRLTIDIEKLEVS--NGRVSASFHLSERHHKMIL 170

Query: 182 NGFDDIGLTLRKADTIRAYEEKHLHEQPWLSNT 214
           NG D +G +L     I ++ EK   ++PWL + 
Sbjct: 171 NGLDMLGASLLYKTEIISFAEKWHEQRPWLKDV 203


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.140    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 434,070
Number of extensions: 17962
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 215
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 137
Effective length of database: 743,337
Effective search space: 101837169
Effective search space used: 101837169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)