BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3256.p
         (370 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094447|ref|YP_001099522.1| aspartate-semialdehyde dehydrog...   688   0.0  

>gi|134094447|ref|YP_001099522.1| aspartate-semialdehyde
           dehydrogenase [Herminiimonas arsenicoxydans]
          Length = 368

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/366 (90%), Positives = 353/366 (96%)

Query: 1   MKLVGLVGWRGMVGSVLMQRMQDEGDFDHIEPVFFSTSNAGGKAPSFAKKETTLKDANSI 60
           MK+VGLVGWRGMVGSVLMQRMQ+EGDF+HIEPVFF+TSN GGKAP+ AKKETTL+DAN I
Sbjct: 1   MKVVGLVGWRGMVGSVLMQRMQEEGDFEHIEPVFFTTSNKGGKAPAMAKKETTLQDANDI 60

Query: 61  EELKKCDIIITAQGGDYTNEIFPKLRAAGWDGYWIDAASSLRMKDDAVIVLDPVNSNVIK 120
           + LKKCDIIIT QGGDYT EIFPKLRAAGWDGYWIDAAS+LRMKDDAVI+LDPVN NVI 
Sbjct: 61  DALKKCDIIITCQGGDYTTEIFPKLRAAGWDGYWIDAASTLRMKDDAVIILDPVNQNVIT 120

Query: 121 DALAKGVKNYIGGNCTNSILLMGVGGLFKEGLVEWVSSMTYQAASGGGANHMRELLKGMG 180
           DAL +GVKNYIGGNCTNSILLMGVGGLF+EGLVEWVSSMTYQAASGGGANHMRELL GMG
Sbjct: 121 DALERGVKNYIGGNCTNSILLMGVGGLFREGLVEWVSSMTYQAASGGGANHMRELLSGMG 180

Query: 181 VINAAVAEELATPSSAILDIDRKVAKTIREDVPTEFFGAPLAGGLIPWIDAQLENGQSKE 240
           V++ AVA+ELATP+SAILDIDRKVA+TIR++VPTEFFGAPLAGGLIPWIDAQLENGQSKE
Sbjct: 181 VVHGAVADELATPASAILDIDRKVAETIRKEVPTEFFGAPLAGGLIPWIDAQLENGQSKE 240

Query: 241 EWKGQAEVNKILGNEQIIPVDGLCVRIGAMRCHSLALTIKLKRDLPLAEIESIIRAGNQW 300
           EWKGQAEVNKILGN + IPVDGLCVRIGAMRCHSLALTIKLKRDLPLAEIESIIR+GNQW
Sbjct: 241 EWKGQAEVNKILGNAKTIPVDGLCVRIGAMRCHSLALTIKLKRDLPLAEIESIIRSGNQW 300

Query: 301 VKWVPNDRAITVKELTPAAITGGLEIGVGRVRKLNQGPEYISAFVIGDQLLWGAAEPLRR 360
           VKWVPN+RA+TVKELTPAAITGGLEIGVGRVRKLNQGPEYISAFVIGDQLLWGAAEPLRR
Sbjct: 301 VKWVPNERAVTVKELTPAAITGGLEIGVGRVRKLNQGPEYISAFVIGDQLLWGAAEPLRR 360

Query: 361 MLRIIL 366
           MLRI+L
Sbjct: 361 MLRIVL 366


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 759,316
Number of extensions: 32516
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 287
Effective length of database: 726,862
Effective search space: 208609394
Effective search space used: 208609394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)