BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3255.p
         (889 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094448|ref|YP_001099523.1| hypothetical protein HEAR1220 [...   207   2e-54

>gi|134094448|ref|YP_001099523.1| hypothetical protein HEAR1220
           [Herminiimonas arsenicoxydans]
          Length = 915

 Score =  207 bits (527), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 156/225 (69%), Gaps = 7/225 (3%)

Query: 284 YRVKPGDTLAGIATRNQPANVSLDQMLIALYRANPDAFQGNNINRLRAGKILAIPDQPSA 343
           Y+VK GDTLA IA + +P+ VSLDQML++LYRANPDAF G N+NRLRAG+IL++P+  SA
Sbjct: 219 YQVKKGDTLAKIANQYRPSGVSLDQMLVSLYRANPDAFIGKNMNRLRAGQILSVPEADSA 278

Query: 344 AAVDRDEARSMVVAQAQDFNAYRNKLAGQVANAPAGKPGSSRHSGGGKITTRVEERAGN- 402
            +V + EA+ +VVAQA DFN+YRNKLAGQVA A A K    R + GGKI+TR++E +G  
Sbjct: 279 KSVAQSEAKGVVVAQAADFNSYRNKLAGQVAAAEAKKSDDVRQTAGGKISTRIQEESGTG 338

Query: 403 QDARDRLELSR--ANKGRGKTGNTGTAAEDKAASERALAEANDRVKDLEKNVDNLQKLLE 460
            D++D+L+LS+  A    G       +AED  A +RA+AEAN RVK+LEKNV  LQK+LE
Sbjct: 339 DDSKDKLKLSKSGAAANGGANAGASASAEDLIAKDRAIAEANARVKELEKNVGELQKILE 398

Query: 461 LKNKTIAEMSAQQQKPADAAKPAVADNGAAKAENQPAEAATPTPA 505
           +KNK +AE    QQK A A  PA A    A    +   A TP PA
Sbjct: 399 IKNKDLAE----QQKVASATSPAAAVAPVAPGAAETPAAETPAPA 439



 Score =  183 bits (464), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 155/244 (63%), Gaps = 9/244 (3%)

Query: 1   MKNLSAAIALTLALPLGAHAAGLGKLTVLSALGQPLRAEIEVTSVSAEEAGKLTARLAPA 60
           +K LSAA+   + L   AHAAGLGKLTVLS+LGQPLRAEIE+TSVS +EAG L  +LA A
Sbjct: 18  LKTLSAAVISAVVLS-NAHAAGLGKLTVLSSLGQPLRAEIELTSVSPDEAGSLIPKLASA 76

Query: 61  EAFRRANMDYNPVLSSLSFVIEQRQGRHFIRISSSQPVSDPFVDLLLELSAGNARQMREY 120
           +AFR+AN+D +P L SL F +EQR  R  +RI+S+QP+++PFVD+LLEL+    R +REY
Sbjct: 77  DAFRQANIDLHPALFSLRFAVEQRGNRPIVRITSTQPINEPFVDMLLELAGNKNRLVREY 136

Query: 121 TFLLDPADSKTPRNAQVAPLTPGNAPAATTPAAA-PAAAPATPAAVAPAAEPTPAAAPVA 179
           TFLLDP + ++ R  QVAP+  G A    TP    P +A ++P    P A+P PAA    
Sbjct: 137 TFLLDPPEMRSARAVQVAPIVVGRALPPVTPVERNPESATSSP---EPVAQPAPAARET- 192

Query: 180 APAAPVAAATPAPA-ATPAAPAASAPSSAPIPISGEEPAASIVQRPAPSALAEELIRRQQ 238
             AAP+AA+ P  A A P A A +A     +         +   RP+  +L + L+   +
Sbjct: 193 --AAPIAASKPVRAVAEPKAEADAAADEYQVKKGDTLAKIANQYRPSGVSLDQMLVSLYR 250

Query: 239 ASPD 242
           A+PD
Sbjct: 251 ANPD 254



 Score =  117 bits (292), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 75/105 (71%)

Query: 613 VAEAEPVAAAAPVEEAPVDPIAEADMYIAYGRDEQAEDILKLALQTQPERQALHSKLLEI 672
           V  +  V +A+ ++   VDPIAEAD+YIAYGRD QAE+ILK AL+ QP+R A+  KLLEI
Sbjct: 556 VFNSNFVPSASQLDTNEVDPIAEADVYIAYGRDAQAEEILKEALRNQPDRHAVRVKLLEI 615

Query: 673 YAKRGDVANFNRVALNLHALSGGLNEAWVKAAALGLELDPTNPLY 717
           YA R D  +F  +A  L++L+ G  E W +AA +GL LDP+NPLY
Sbjct: 616 YANRNDARSFEILASELYSLTKGEGEDWKQAANMGLILDPSNPLY 660



 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 842 EMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQIARAKQMMAAL 888
           EM TKLDLA AY+EIGDKEGARELLEEV++GGN  Q  +AK +++ L
Sbjct: 868 EMATKLDLAIAYQEIGDKEGARELLEEVLKGGNGEQSEKAKNLLSKL 914


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.308    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,075,280
Number of extensions: 35178
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 5
Length of query: 889
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 799
Effective length of database: 703,797
Effective search space: 562333803
Effective search space used: 562333803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 133 (55.8 bits)