BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3254.p
         (902 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094448|ref|YP_001099523.1| hypothetical protein HEAR1220 [...   207   1e-54

>gi|134094448|ref|YP_001099523.1| hypothetical protein HEAR1220
           [Herminiimonas arsenicoxydans]
          Length = 915

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 156/225 (69%), Gaps = 7/225 (3%)

Query: 297 YRVKPGDTLAGIATRNQPANVSLDQMLIALYRANPDAFQGNNINRLRAGKILAIPDQPSA 356
           Y+VK GDTLA IA + +P+ VSLDQML++LYRANPDAF G N+NRLRAG+IL++P+  SA
Sbjct: 219 YQVKKGDTLAKIANQYRPSGVSLDQMLVSLYRANPDAFIGKNMNRLRAGQILSVPEADSA 278

Query: 357 AAVDRDEARSMVVAQAQDFNAYRNKLAGQVANAPAGKPGSSRHSGGGKITTRVEERAGN- 415
            +V + EA+ +VVAQA DFN+YRNKLAGQVA A A K    R + GGKI+TR++E +G  
Sbjct: 279 KSVAQSEAKGVVVAQAADFNSYRNKLAGQVAAAEAKKSDDVRQTAGGKISTRIQEESGTG 338

Query: 416 QDARDRLELSR--ANKGRGKTGNTGTAAEDKAASERALAEANDRVKDLEKNVDNLQKLLE 473
            D++D+L+LS+  A    G       +AED  A +RA+AEAN RVK+LEKNV  LQK+LE
Sbjct: 339 DDSKDKLKLSKSGAAANGGANAGASASAEDLIAKDRAIAEANARVKELEKNVGELQKILE 398

Query: 474 LKNKTIAEMSAQQQKPADAAKPAVADNGAAKAENQPAEAATPTPA 518
           +KNK +AE    QQK A A  PA A    A    +   A TP PA
Sbjct: 399 IKNKDLAE----QQKVASATSPAAAVAPVAPGAAETPAAETPAPA 439



 Score =  184 bits (467), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/262 (45%), Positives = 162/262 (61%), Gaps = 15/262 (5%)

Query: 1   MPVNTNKKLPRSQ-----MKNLSAAIALTLALPLGAHAAGLGKLTVLSALGQPLRAEIEV 55
           MP+   +  PRS      +K LSAA+   + L   AHAAGLGKLTVLS+LGQPLRAEIE+
Sbjct: 1   MPLKM-RSTPRSSFSSFTLKTLSAAVISAVVLS-NAHAAGLGKLTVLSSLGQPLRAEIEL 58

Query: 56  TSVSAEEAGKLTARLAPAEAFRRANMDYNPVLSSLSFVIEQRQGRHFIRISSSQPVSDPF 115
           TSVS +EAG L  +LA A+AFR+AN+D +P L SL F +EQR  R  +RI+S+QP+++PF
Sbjct: 59  TSVSPDEAGSLIPKLASADAFRQANIDLHPALFSLRFAVEQRGNRPIVRITSTQPINEPF 118

Query: 116 VDLLLELSAGNARQMREYTFLLDPADSKTPRNAQVAPLTPGNAPAATTPAAA-PAAAPAT 174
           VD+LLEL+    R +REYTFLLDP + ++ R  QVAP+  G A    TP    P +A ++
Sbjct: 119 VDMLLELAGNKNRLVREYTFLLDPPEMRSARAVQVAPIVVGRALPPVTPVERNPESATSS 178

Query: 175 PAAVAPAAEPTPAAAPVAAPAAPVAAATPAPA-ATPAAPAASAPSSAPIPISGEEPAASI 233
           P    P A+P PAA      AAP+AA+ P  A A P A A +A     +         + 
Sbjct: 179 P---EPVAQPAPAARET---AAPIAASKPVRAVAEPKAEADAAADEYQVKKGDTLAKIAN 232

Query: 234 VQRPAPSALAEELIRRQQASPD 255
             RP+  +L + L+   +A+PD
Sbjct: 233 QYRPSGVSLDQMLVSLYRANPD 254



 Score =  117 bits (292), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/105 (54%), Positives = 75/105 (71%)

Query: 626 VAEAEPVAAAAPVEEAPVDPIAEADMYIAYGRDEQAEDILKLALQTQPERQALHSKLLEI 685
           V  +  V +A+ ++   VDPIAEAD+YIAYGRD QAE+ILK AL+ QP+R A+  KLLEI
Sbjct: 556 VFNSNFVPSASQLDTNEVDPIAEADVYIAYGRDAQAEEILKEALRNQPDRHAVRVKLLEI 615

Query: 686 YAKRGDVANFNRVALNLHALSGGLNEAWVKAAALGLELDPTNPLY 730
           YA R D  +F  +A  L++L+ G  E W +AA +GL LDP+NPLY
Sbjct: 616 YANRNDARSFEILASELYSLTKGEGEDWKQAANMGLILDPSNPLY 660



 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 39/47 (82%)

Query: 855 EMTTKLDLAAAYEEIGDKEGARELLEEVMRGGNDAQIARAKQMMAAL 901
           EM TKLDLA AY+EIGDKEGARELLEEV++GGN  Q  +AK +++ L
Sbjct: 868 EMATKLDLAIAYQEIGDKEGARELLEEVLKGGNGEQSEKAKNLLSKL 914


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.308    0.124    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,096,786
Number of extensions: 35513
Number of successful extensions: 173
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 5
Length of query: 902
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 812
Effective length of database: 703,797
Effective search space: 571483164
Effective search space used: 571483164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 133 (55.8 bits)