BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3251.p
         (419 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094451|ref|YP_001099526.1| tryptophan synthase subunit bet...   739   0.0  

>gi|134094451|ref|YP_001099526.1| tryptophan synthase subunit beta
           [Herminiimonas arsenicoxydans]
          Length = 423

 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/419 (82%), Positives = 383/419 (91%)

Query: 1   MKELNPLGGFAERQAIPAAALHQTAHYNLPDARGHFGPYGGSFVSETLTLALNELREAYA 60
           MKEL+ LG +AERQA+   ALHQTA YNLPDARGHFG YGGSFV+ETL+ AL ELR+AYA
Sbjct: 1   MKELDALGTYAERQAVSETALHQTAPYNLPDARGHFGQYGGSFVAETLSHALAELRDAYA 60

Query: 61  RYQHDEQFLAEFHTELKHFVGRPSPVYHAKRWSELAGGAQIYFKREDLNHTGAHKINNVI 120
            Y  D  FLAEFH +LKHFVGRPSP+YHAKRWSE  GGAQIYFKREDLNHTGAHKINNVI
Sbjct: 61  HYSKDPAFLAEFHYDLKHFVGRPSPIYHAKRWSEKMGGAQIYFKREDLNHTGAHKINNVI 120

Query: 121 GQALLAKRMGKQRIIAETGAGQHGVATATICARFGMECIVYMGSEDVKRQLQNVYRMNLL 180
           GQALLA+RMGK+RIIAETGAGQHGVATATICARFG+EC+VYMGSEDVKRQ QNVYRM LL
Sbjct: 121 GQALLARRMGKKRIIAETGAGQHGVATATICARFGLECVVYMGSEDVKRQAQNVYRMKLL 180

Query: 181 GAKVVPVESGSKTLKDALNEAMRDWVTNVETTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240
           GA VVPVESGSKTLKDALNEAMRDWVTN+E TFYIIGTVAGPHPYPMMVRDFQSVIGNEC
Sbjct: 181 GATVVPVESGSKTLKDALNEAMRDWVTNIENTFYIIGTVAGPHPYPMMVRDFQSVIGNEC 240

Query: 241 IQQMPEIAARQPDYVVAAVGGGSNAMGIFYPYIDYPDVKLVGVEAAGDGLDTGRHSASLT 300
           + QMPE+ +RQPDYV+A +GGGSNAMGIFYPYI++ +V+L+GVEAAG+GL++G+HSASL 
Sbjct: 241 LTQMPEMTSRQPDYVIACIGGGSNAMGIFYPYIEHKNVQLIGVEAAGEGLESGKHSASLM 300

Query: 301 LGSPGVLHGNRTYLLQDANGQIIETHSVSAGLDYPGVGPEHAWLKDSGRASYACITDDEA 360
            GSPGVLHGNRTYLLQD NGQI+ETHS+SAGLDYPGVGPEHAWLKDSGRA Y  ITD++A
Sbjct: 301 AGSPGVLHGNRTYLLQDENGQIMETHSISAGLDYPGVGPEHAWLKDSGRAQYVSITDEDA 360

Query: 361 LDAFNTCCRIEGIIPALESSHALAHAAKLAATLPRDQIVLVNLSGRGDKDMHTVQQRQG 419
           L AF+ CC IEGIIPALESSHAL++AAKLAATLP++Q+VLVNLSGRGDKDMHTV QR G
Sbjct: 361 LQAFHDCCHIEGIIPALESSHALSYAAKLAATLPKEQVVLVNLSGRGDKDMHTVAQRMG 419


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 849,435
Number of extensions: 36860
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 335
Effective length of database: 723,567
Effective search space: 242394945
Effective search space used: 242394945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)