BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3249.p
         (289 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|161485637|ref|YP_001099528.2| acetyl-CoA carboxylase subunit ...   548   e-157

>gi|161485637|ref|YP_001099528.2| acetyl-CoA carboxylase subunit
           beta [Herminiimonas arsenicoxydans]
          Length = 290

 Score =  548 bits (1412), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 260/290 (89%), Positives = 280/290 (96%), Gaps = 1/290 (0%)

Query: 1   MSWLEKLLPPQIQRGST-SRKAIPEGLWVKCPSCEAVLYRTDLESNLHVCPKCSHHMRIR 59
           MSWLEKLLPP+IQR  T SRK++PEGLWVKCPSCE+VLYRTDLESN+HVCPKC+HHMRIR
Sbjct: 1   MSWLEKLLPPRIQRSDTASRKSVPEGLWVKCPSCESVLYRTDLESNIHVCPKCNHHMRIR 60

Query: 60  ARARLDALLDEGGRYEIGQEALPVDTLKFKDSKKYPDRLKDAMESTGETDAMVVMGGAIM 119
           AR RLDALLD GGRY+IGQE LPVDTLKFKDSKKYPDRLK A+E+TGETDA++VMGG+IM
Sbjct: 61  ARDRLDALLDAGGRYDIGQEVLPVDTLKFKDSKKYPDRLKSALEATGETDALIVMGGSIM 120

Query: 120 TLPVVVACFEFEFMGGSMGSVVGERFVRGAQAALEQKVPFICITATGGARMQEGLLSLMQ 179
           +LPVVVACFEFEFMGGSMGSVVGERF RGAQ ALEQKVPFICITATGGARMQEGLLSLMQ
Sbjct: 121 SLPVVVACFEFEFMGGSMGSVVGERFARGAQTALEQKVPFICITATGGARMQEGLLSLMQ 180

Query: 180 MAKTTAMLTKLAEKKLPFISVLTDPTMGGVSASFAFMGDVVMAEPRALIGFAGPRVIENT 239
           MAKTT+MLTKL+EKKLPFISVLTDPTMGGVSASFAFMGDVV+AEP+ALIGFAGPRVIENT
Sbjct: 181 MAKTTSMLTKLSEKKLPFISVLTDPTMGGVSASFAFMGDVVIAEPKALIGFAGPRVIENT 240

Query: 240 VREKLPEGFQRAEFLVTKGAIDMIVDRRKMREEIAHLLALLQNQAAETVS 289
           VREKLPEGFQRAEFLVTKGA+DMIVDRRKMREEIAHLLALLQNQAAE ++
Sbjct: 241 VREKLPEGFQRAEFLVTKGAVDMIVDRRKMREEIAHLLALLQNQAAEVLA 290


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 486,611
Number of extensions: 17773
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 208
Effective length of database: 733,452
Effective search space: 152558016
Effective search space used: 152558016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)