BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3248.p
         (437 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094454|ref|YP_001099529.1| bifunctional folylpolyglutamate...   659   0.0  

>gi|134094454|ref|YP_001099529.1| bifunctional folylpolyglutamate
           synthase/dihydrofolate synthase [Herminiimonas
           arsenicoxydans]
          Length = 433

 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/429 (73%), Positives = 357/429 (83%)

Query: 9   PATLNEWLALLEQRHFKQIDMGLERVLAVKQKLDIRFDCPVIMVAGTNGKGSTCAMLESI 68
           P+ L EWLA LE  H K IDMGL+RV  VKQ + + F CPVI+V GTNGKGSTCAMLESI
Sbjct: 5   PSNLAEWLAHLETMHPKAIDMGLDRVRQVKQAMTVEFTCPVIIVGGTNGKGSTCAMLESI 64

Query: 69  LARAGYRVGLYIKPHFLHFNERARISGDMASDAQLIAAFEAVEAQRGEISLTYFEFTTLA 128
           L RAGYRVGLY  PH LHFNER RI+G+ ASDA+L+AAF+ +EA RG++SL+YFEFTTLA
Sbjct: 65  LLRAGYRVGLYTSPHLLHFNERMRINGESASDAELLAAFDKLEAVRGDVSLSYFEFTTLA 124

Query: 129 IMKLLADAKQDVVILEVGLGGRLDAVNVVDADVAIVTSIDIDHTEYLGETREEIGFEKAG 188
            ++L +DAK D VI EVGLGGRLDAVNV+DADVAIVTSIDIDHTEYLG+TRE+IGFEKAG
Sbjct: 125 AIQLFSDAKLDAVIFEVGLGGRLDAVNVLDADVAIVTSIDIDHTEYLGDTREKIGFEKAG 184

Query: 189 IFRPGKVAVCGDPLPPKSLIAHAEKIGADLWLMGRDYNYQGDKQQWAYGGRAMRRNSLAY 248
           IFR GK A+CGDP+PP SLI HAEKIGADLWL  RD+NY GDKQQW + GR  RRNSLAY
Sbjct: 185 IFRSGKAAICGDPVPPASLIEHAEKIGADLWLFNRDFNYSGDKQQWNFSGRGHRRNSLAY 244

Query: 249 PSLRGANQLLNASAALAALEALREVLPVGAQEVRTGLATVELPARFQVLPGQPLVILDVA 308
           PSLRGANQLLNAS+ LAALE LR  LPVGAQEVRTGLA V+LP RFQVLPGQP ++LDVA
Sbjct: 245 PSLRGANQLLNASSVLAALEVLRLRLPVGAQEVRTGLALVDLPGRFQVLPGQPTIVLDVA 304

Query: 309 HNPHAAATLAQNLDNMGFHPYTYAVFGSMLDKDIEGVISHLKDKIDHWCVTDLPLPRAAS 368
           HNPHAAA LAQNL NMGFHPYTYAVFG+M DKDI+GVI+HLK ++DHWCVTDLPLPRAA+
Sbjct: 305 HNPHAAAALAQNLGNMGFHPYTYAVFGAMQDKDIDGVIAHLKGQVDHWCVTDLPLPRAAT 364

Query: 369 AQQLKETLLGAGVQPEFRRDAARSIETFTSPAQAYANALSRAGENDRIVVFGSFLTVAGV 428
           A  +++ LL A        +  RSI TF +PA A+ANALSRAGENDRI VFGSFLTVAGV
Sbjct: 365 AADIRDKLLHAYADLPPAVETERSIRTFATPADAFANALSRAGENDRITVFGSFLTVAGV 424

Query: 429 MQARRPGRH 437
           M+ R    H
Sbjct: 425 MEFRHSEHH 433


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.136    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 794,077
Number of extensions: 31351
Number of successful extensions: 114
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 353
Effective length of database: 723,567
Effective search space: 255419151
Effective search space used: 255419151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)