BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3247.p
         (333 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094455|ref|YP_001099530.1| hypothetical protein HEAR1227 [...   234   6e-63

>gi|134094455|ref|YP_001099530.1| hypothetical protein HEAR1227
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score =  234 bits (596), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 150/339 (44%), Positives = 196/339 (57%), Gaps = 60/339 (17%)

Query: 1   MGLFSLFRKNKQDSASDQGTFRSRADEQSSVIRSRNSRSTANGSGRAASGRAKAGKDAAD 60
           MGLFS  RKNKQ+S+  +  F S++DE+    RS           R   GR    ++A D
Sbjct: 1   MGLFSFLRKNKQESSVGKSDFYSQSDEEVPTGRS----------NRKQGGRGSKREEAVD 50

Query: 61  PLLPEKKRARRRLIGAVALALAVVIVLPMILDSEPKPLNEDIAIQIPSKDAPV------A 114
           P+LPEKKRARRRL+GA+AL LA +I LPMILDSEPKPL +DIAIQIPSKD PV      A
Sbjct: 51  PVLPEKKRARRRLVGAIALVLAAIIGLPMILDSEPKPLADDIAIQIPSKDTPVPPAQGKA 110

Query: 115 DMTQPGRSDPKQASLDQKEEIVEPASIAPEPASPTPTPTPTPTPAPAAAQPETPPVAVTP 174
              Q    +P   SL+ +EE++EP++IAP+    T   T      P     +TPP  V  
Sbjct: 111 AAVQKENREPLAESLNPEEEVLEPSAIAPKAEVKTEVKTEIKVVEP---DKKTPPAPVMK 167

Query: 175 KVVEKPVEKPVEKHQEKSTEKPTEKSAAKTEHKEEPKREEPKKEAAKPKAPAATDDDAAR 234
             + +P         + +T  P   S AK +H                       D+AAR
Sbjct: 168 AELPEP---------KVATHPP---SIAKADH----------------------SDEAAR 193

Query: 235 ALAILEGKSGAAAAPAEKKPAAAGGKFVIQVAALATQDKVNELRNKLSAAGIHSYTQKIA 294
           A AILEGKS +          AA GK V+QVAALATQDKVNEL+ KL  AG+ SYTQK+A
Sbjct: 194 ARAILEGKSNSTE-------HAATGKVVLQVAALATQDKVNELQKKLQGAGLKSYTQKVA 246

Query: 295 TQAGDRTRIRVGPFASREEAERMGGRIKKLGLNATIVPA 333
           T++G+R R+R+GPFA+  EAE+   ++ K+GL+A ++PA
Sbjct: 247 TESGERIRVRIGPFANNAEAEKARAKLLKIGLDAKLIPA 285


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.307    0.124    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 299,599
Number of extensions: 7306
Number of successful extensions: 37
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 251
Effective length of database: 730,157
Effective search space: 183269407
Effective search space used: 183269407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 129 (54.3 bits)