BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3246.p
         (166 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094456|ref|YP_001099531.1| membrane protein required for c...   143   5e-36

>gi|134094456|ref|YP_001099531.1| membrane protein required for
           colicin V production [Herminiimonas arsenicoxydans]
          Length = 127

 Score =  143 bits (360), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 71/127 (55%), Positives = 90/127 (70%)

Query: 36  VALVVANTYGEALSAMLPDVVPGELTRLIVAFIALFIGTRLLVALVAKTLGELVKATGLG 95
           +A VVAN YGE+L+ +LPD+VPG  TRLIV FI LFIG R+L+ L+   L  +VKA+GL 
Sbjct: 1   MAFVVANAYGESLAQLLPDMVPGNTTRLIVGFIVLFIGVRILMGLLTMALDAVVKASGLT 60

Query: 96  FLDRTLGSVFGVARGVLLVVAVALLCGTTEIPRQPFWTQARFSPWVVQAAQAVLPYLPGK 155
             DR LG +FG+ARG+L+V+A  LLCG T IP+Q FW +A FSP    AA  V P+LPG 
Sbjct: 61  LADRGLGGLFGLARGLLIVLAGVLLCGMTAIPQQGFWKEALFSPLAETAALTVKPFLPGD 120

Query: 156 LAEHVSF 162
            A H+ F
Sbjct: 121 FARHIKF 127


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.143    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 274,346
Number of extensions: 9112
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 91
Effective length of database: 753,222
Effective search space: 68543202
Effective search space used: 68543202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)