BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3245.p
         (506 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094457|ref|YP_001099532.1| amidophosphoribosyltransferase ...   910   0.0  
gi|134096352|ref|YP_001101427.1| glucosamine--fructose-6-phospha...    71   1e-13

>gi|134094457|ref|YP_001099532.1| amidophosphoribosyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 505

 Score =  910 bits (2352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/506 (84%), Positives = 476/506 (94%), Gaps = 1/506 (0%)

Query: 1   MCGIVGIVSHSPVNQMLYDALLLLQHRGQDAAGIATNHANGFSMHKANGLVRDVFRTRNM 60
           MCGIVG+VSH+PVNQ++YDALLLLQHRGQDAAGIAT++ N FSMHKANGLVRDVFRTRNM
Sbjct: 1   MCGIVGVVSHNPVNQLIYDALLLLQHRGQDAAGIATDNGNTFSMHKANGLVRDVFRTRNM 60

Query: 61  RSLPGNTGIGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKIEMFKNDR 120
           RSL GN+G+GQVRYPTAGSSS+EE AQPFYVNAPFGII+AHNGNLTN EQLKIEMFKNDR
Sbjct: 61  RSLFGNSGVGQVRYPTAGSSSAEE-AQPFYVNAPFGIIMAHNGNLTNWEQLKIEMFKNDR 119

Query: 121 RHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSYAVVAQIAGYGL 180
           RHINT SD+EVLLNVLAHEIQQATTGYSLDPAA+FKAVAMVHKRVRGSYAV AQIAGYGL
Sbjct: 120 RHINTTSDSEVLLNVLAHEIQQATTGYSLDPAAIFKAVAMVHKRVRGSYAVTAQIAGYGL 179

Query: 181 LGFRDPYGIRPMCLGFNESDKGIEYMMASESVALEGMGFRFLRDVNPGEAIFIDNDGKLY 240
           L FRDP+GIRP+C+GFNE+++G EY++ASESVALEG+GFRFLRDV PGEAIFID +GKLY
Sbjct: 180 LAFRDPFGIRPLCIGFNETEQGTEYLVASESVALEGLGFRFLRDVLPGEAIFIDIEGKLY 239

Query: 241 NQQCAENPTLNPCAFEYVYLARPDSIIDGASVYATRLKMGEFLAEKIRRQFKHGEIDVVM 300
           NQQCAENPTLNPCAFE+VY ARPDSIIDGASVYATRLKMGE+LAEKI R+F  G+IDVVM
Sbjct: 240 NQQCAENPTLNPCAFEFVYFARPDSIIDGASVYATRLKMGEYLAEKIAREFPLGDIDVVM 299

Query: 301 PIPDSSRPAAMELALKLGIEYREGFIKNRYIGRTFIMPGQALRKKSVRQKLNAIGSEFKG 360
           PIPDSSRPAAMELA KL IEYREGFIKNRYIGRTF+MPGQA+R KSVRQKLNAIGSEFKG
Sbjct: 300 PIPDSSRPAAMELAHKLNIEYREGFIKNRYIGRTFLMPGQAIRSKSVRQKLNAIGSEFKG 359

Query: 361 KNVLLVDDSIVRGTTSREIVQMARESGAKNVIFASAAPPVKFPNVYGIDMPTRDELIAFG 420
           KNVLL+DDSIVRGTTSREIVQMARE+GAK V+FASAAPPVKFPNVYGIDMPTR ELIA+G
Sbjct: 360 KNVLLIDDSIVRGTTSREIVQMAREAGAKKVMFASAAPPVKFPNVYGIDMPTRAELIAYG 419

Query: 421 RSEEEVCREITADALVYQDVEDLKRAISDANPALKQFEASCFDGHYITGDITQEYLDRIE 480
           R++EEVCREITADAL+YQD++ LKR+ISD NPALK  EASCFDG Y+TGDI+++YLDRIE
Sbjct: 420 RTDEEVCREITADALIYQDIDALKRSISDVNPALKSLEASCFDGIYVTGDISRDYLDRIE 479

Query: 481 YARKNPKPALEDVVRSQLNLNLARAD 506
           +AR NPKP  +D +RSQLNLNLA+ D
Sbjct: 480 FARNNPKPETDDAIRSQLNLNLAQVD 505


>gi|134096352|ref|YP_001101427.1| glucosamine--fructose-6-phosphate
           aminotransferase [Herminiimonas arsenicoxydans]
          Length = 605

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 114/247 (46%), Gaps = 30/247 (12%)

Query: 1   MCGIVGIVSHSPVNQMLYDALLLLQHRGQDAAGIATNHANGFSMHKANGLVRDVFRTRNM 60
           MCGIVG V+   +  +L + L  L++RG D+ GIA +        ++   V ++ R    
Sbjct: 1   MCGIVGAVAQRNITPILLEGLKRLEYRGYDSCGIALHVDGELKRARSTERVTELERQIAS 60

Query: 61  RSLPGNTGIGQVRYPTAGSSSSEEEAQPFYVNAPFGIILAHNGNLTNAEQLKIEMFKNDR 120
             L G TGI   R+ T G+ +S   A P +      I L HNG + N ++L+ E+ K   
Sbjct: 61  TQLSGFTGIAHTRWATHGAPAS-HNAHPHFSRDR--IALVHNGIIENHDELRDEL-KALG 116

Query: 121 RHINTDSDTEVLLNVLAHEIQQATTGYSLDPAALFKAVAMVHKRVRGSY--AVVAQIAGY 178
               + +DTE    V+AH +    TG       LF+ V +  KR+ G++  AV ++   +
Sbjct: 117 YVFESQTDTE----VIAHLVDHLYTG------DLFETVQLAAKRLTGAFAIAVFSRDEPH 166

Query: 179 GLLGFRDPYGIRPMCLGFNESDKGIEYMMASESVALEGMGFRFLR-------DVNPGEAI 231
            ++G R      P+ +G        E  +AS+++AL G   + +        D+      
Sbjct: 167 RVVGARRG---SPLIVGIGNG----ENFVASDALALAGTTDQIIYLEEGDVVDLQLQRVW 219

Query: 232 FIDNDGK 238
            +D DGK
Sbjct: 220 IVDADGK 226


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 959,103
Number of extensions: 40146
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 2
Length of query: 506
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 420
Effective length of database: 716,977
Effective search space: 301130340
Effective search space used: 301130340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)