BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3241.p
         (300 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095366|ref|YP_001100441.1| putative hydrolase protein [Her...   381   e-107
gi|134095009|ref|YP_001100084.1| putative hydrolase protein [Her...    66   3e-12

>gi|134095366|ref|YP_001100441.1| putative hydrolase protein
           [Herminiimonas arsenicoxydans]
          Length = 290

 Score =  381 bits (979), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 179/289 (61%), Positives = 218/289 (75%), Gaps = 1/289 (0%)

Query: 8   KASRSEFFDVRGLRYHVRHWGDPQAPKIFMMHGWMDMSASFQFMVDALQGQWHVIAPDWR 67
           K+S SEF  +RG+ YH+RHWGD +AP +FM+HGWMD+SASFQF+VDALQ  WHVIAPDWR
Sbjct: 2   KSSHSEFISLRGMHYHIRHWGDQRAPMLFMLHGWMDVSASFQFLVDALQRDWHVIAPDWR 61

Query: 68  GFGLTERSPAQSYWFPDYLADLDAILDHYAPDQAINLLGHSMGGNVVTLYAGVRPQRIAR 127
           GFGL+ R+ A  YWFPDYLADLDAIL HYAP+QA+NLLGHS+G NV  +YAGVR  RI +
Sbjct: 62  GFGLSARTAA-PYWFPDYLADLDAILRHYAPEQAVNLLGHSLGANVAGIYAGVRASRIKK 120

Query: 128 LINLEGLGLPTAKPEQAPGRFVQWMDEVKNRPILRGYATLQEVAARLQKNNARLSDERAA 187
           L+ LEG G+   +P++AP R+  W+D+V+  P L  YAT+  VAARLQKNN RLSDERAA
Sbjct: 121 LVMLEGFGMSVTQPDEAPVRYASWLDQVQGTPRLHSYATVNGVAARLQKNNPRLSDERAA 180

Query: 188 FLAQHWAQQDESGLWQILGDPAHKQVSPILYRVDEMMACWSRISAPVLWIEAIDSDIWRF 247
           FLA HWA Q+E G W IL DP HK  +P LYRVDE+MACW  I+AP LWIEA DS++ R 
Sbjct: 181 FLASHWAAQNEGGSWDILADPWHKLPNPNLYRVDEVMACWQAITAPTLWIEASDSELLRR 240

Query: 248 FGPASLKREEIDRRIACIPKTQVEMIAEAGHMLHHDQPERLAQLIETFL 296
            G     R EI RRIA +    +  + +AGHM+ HDQPE +A+ IE FL
Sbjct: 241 MGSGESARAEIARRIAYLRNATILTVQDAGHMVQHDQPEIVAEAIEKFL 289


>gi|134095009|ref|YP_001100084.1| putative hydrolase protein
           [Herminiimonas arsenicoxydans]
          Length = 288

 Score = 65.9 bits (159), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 121/268 (45%), Gaps = 27/268 (10%)

Query: 21  RYHVRHWGDPQAPKIFM-MHGWMDMSASFQFMVDALQGQWHVIAPDWRGFGLTE--RSPA 77
           R   + WGDP  PK+ + +HG   +S  F  +  AL   + V+ PD  G G +E  R P 
Sbjct: 19  RMAYKEWGDPANPKVLICVHGLTRVSDDFDALAQALSHDYRVVCPDVVGRGRSEHLRDP- 77

Query: 78  QSYWFPDYLADLDAILDHYAPDQAINLLGHSMGGNVVTLYAGVRPQRIARLINLEGLGLP 137
           Q Y  P Y++D+  ++      ++++ LG SMGG +  + A +    I +L+ L  +G  
Sbjct: 78  QYYQVPQYVSDMVTLIARLDV-ESVHWLGTSMGGVIGMVLASLPDTPIRKLL-LNDIG-- 133

Query: 138 TAKPEQAPGRFVQWM-DEVKNRPILRGYATLQEVAARLQKNNARLSDERAAFLAQHWAQQ 196
            A   QA  R  +++  +V+       +  ++ ++     +    S+E+   LA    +Q
Sbjct: 134 PAIDAQALARIGEYVGQDVRFASFDEAWQYVRAISLSFGAH----SEEQWRKLAADVMRQ 189

Query: 197 DESGLWQILGDPA----HKQVSPILYRVDE--MMACWSRISAPVLWIEAIDSDIWRFFGP 250
           +  G W  + DP      +Q +    R DE  + A +  I+ PVL +   DSD+      
Sbjct: 190 NAQGQWVFVYDPGLALPFRQATAESARQDEQRLWAAYDAITCPVLLVRGTDSDLLSPETA 249

Query: 251 ASLKREEIDRRIACIPKTQVEMIAEAGH 278
            ++ +          PK +V  +A  GH
Sbjct: 250 LAMSQRG--------PKAKVVELAGVGH 269


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 626,734
Number of extensions: 26998
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 219
Effective length of database: 733,452
Effective search space: 160625988
Effective search space used: 160625988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)