BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3238.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179 [...   334   2e-93
gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC fa...    64   5e-12

>gi|134095363|ref|YP_001100438.1| hypothetical protein HEAR2179
           [Herminiimonas arsenicoxydans]
          Length = 207

 Score =  334 bits (857), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/208 (78%), Positives = 182/208 (87%), Gaps = 1/208 (0%)

Query: 1   MSQFFEIHPDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVD 60
           MSQFF+IHP+NPQ RLI QA ++I  GG+VALPTDSCYALVCQLD+KDAV R+RRIR VD
Sbjct: 1   MSQFFQIHPENPQARLISQAVEVIKGGGIVALPTDSCYALVCQLDDKDAVARLRRIRNVD 60

Query: 61  EKHHLTLLCRDLSEIAQYAKVDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIG 120
           +KHHLTLLCRDLSEIAQYAK+DN+QYRL+KAATPGA+TFILEATKEVPRRLSHPSRKTIG
Sbjct: 61  DKHHLTLLCRDLSEIAQYAKIDNQQYRLLKAATPGAYTFILEATKEVPRRLSHPSRKTIG 120

Query: 121 LRVPENRIAHMLLEELGQPLLGTTLILPDEELPLTHAEDIRSHLEKRIELVIDSGACSLE 180
           LRVPENRI H +LEEL QPLLGTTLILP E+ PLT  +D+R  L K ++LVID GACS  
Sbjct: 121 LRVPENRIVHAVLEELAQPLLGTTLILPGEDEPLTDPDDVRDRLSKVVDLVIDGGACSFI 180

Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIFGL 208
           PTTVIDLT   EPVL RQGRGDA+ FGL
Sbjct: 181 PTTVIDLT-GPEPVLQRQGRGDAAPFGL 207


>gi|134095773|ref|YP_001100848.1| putative Sua5/YciO/YrdC/YwlC
           family protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score = 64.3 bits (155), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 9   PDNPQLRLIKQAAQIIHKGGLVALPTDSCYALVCQLDNKDAVERVRRIRGVDEKHHLTLL 68
           P++  L  I  AA+ + +G LVA PT++ Y L    +N  AV ++ + +G    H + + 
Sbjct: 2   PESLDLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVH 61

Query: 69  CRDLSEIAQYAK-VDNRQYRLMKAATPGAFTFILEATKEVPRRLSHPSRKTIGLRVPENR 127
               ++IA +AK V     +L+ A  PG  T IL+    +P  ++   + +IGLR P + 
Sbjct: 62  LAPEADIAYWAKDVSPEARQLIAAFWPGPLTLILKRANHIPDTVAG-GQDSIGLRCPSHP 120

Query: 128 IAHMLLEELGQPLLGTTLILPDE--ELPLTHAEDIRSHL----EKRIELVIDSGACSLE- 180
           +A  LL    Q   G      ++   +  T A+ +R          +  V+D G   +  
Sbjct: 121 VAQALLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGI 180

Query: 181 PTTVIDLTDDEEPVLVRQGRGDASIFG 207
            +T++D++     VL+R G   A+  G
Sbjct: 181 ESTIVDMSRGRA-VLLRPGHISAAQIG 206


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 407,494
Number of extensions: 16262
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)