BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3237.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095362|ref|YP_001100437.1| M50 family peptidase [Herminiim...   299   9e-83

>gi|134095362|ref|YP_001100437.1| M50 family peptidase
           [Herminiimonas arsenicoxydans]
          Length = 218

 Score =  299 bits (765), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 149/218 (68%), Positives = 180/218 (82%), Gaps = 2/218 (0%)

Query: 1   MNDLIQTVAVYALPVLFAITLHEAAHAYAAKFFGDNTAYSMGRMSMNPMKHIDPFGTILI 60
           MN+LIQT +VYALP++ AITLHEAAHAYAAK+FGD TAY+ GRMS+NP+KHIDP GT+LI
Sbjct: 1   MNELIQTFSVYALPIVLAITLHEAAHAYAAKYFGDTTAYAQGRMSLNPIKHIDPIGTLLI 60

Query: 61  PVLLYFATGGNFLFGYAKPVPINFGHLRKPKRDMAWVALAGPAANFFMAFLWMVAIYALA 120
           P++LYF  G  FLFGYAKPVP+NFG+LR PK+ MA+VALAGPAAN  MA  W++    L 
Sbjct: 61  PIVLYF-VGSPFLFGYAKPVPVNFGNLRNPKKQMAFVALAGPAANLVMALGWLIFGILLH 119

Query: 121 LGGVQEEFFTLMARAGVLTNLVMFAFNLFPIPPLDGGRILTSLLPHKYAYKFAQIEPYGF 180
                EEFF  MA+AGVLTNLV+FAFNLFP+PPLDGGRI+TSLLPHKYAYKFAQ+EPYGF
Sbjct: 120 AINTGEEFFMRMAQAGVLTNLVIFAFNLFPVPPLDGGRIMTSLLPHKYAYKFAQLEPYGF 179

Query: 181 FIVMALVLLKLIYTWWMAPVMYVAGQLLQLITYPITLL 218
           FIV+AL+ LK+++ +WM PVM +A   L L+  P+T L
Sbjct: 180 FIVLALMFLKVLH-YWMVPVMTIAKTGLLLLVSPLTFL 216


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.332    0.145    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 448,015
Number of extensions: 18561
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)