BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3236.p
         (399 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095361|ref|YP_001100436.1| tryptophanyl-tRNA synthetase [H...   667   0.0  

>gi|134095361|ref|YP_001100436.1| tryptophanyl-tRNA synthetase
           [Herminiimonas arsenicoxydans]
          Length = 400

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/399 (77%), Positives = 355/399 (88%)

Query: 1   MYPDRVVSGMRPTGALHLGHYHGALKNWVKLQSELPCLFFVADWHALTTHYDDPSVIETS 60
           M  DRVVSGMRPTGA+HLGHYHGALKNW+KLQSE+PCLFFVADWHALTTHYDDPS+IE+S
Sbjct: 1   MSIDRVVSGMRPTGAMHLGHYHGALKNWIKLQSEVPCLFFVADWHALTTHYDDPSIIESS 60

Query: 61  TWEMVIDWLAAGVDPSQATLFIQSRVPEHAELHLLLSMATPLGWLERVPTYKDQQEKLAD 120
           TWEM+IDWLAAG+DP++++LFIQS+V EHAELHLLLSM TPLGWLERVPTYKDQQEKL++
Sbjct: 61  TWEMLIDWLAAGIDPAKSSLFIQSQVIEHAELHLLLSMITPLGWLERVPTYKDQQEKLSE 120

Query: 121 RDLATYGFLGYPLLQAADVLIYRASQVPVGEDQVPHIEIMREIARRFNHLYGKEKGFEEK 180
           RDLATYGFLGYPLLQAADVLIYRA+QVPVG DQ+PHIE+MREIARRFNHLYGKEKGFEEK
Sbjct: 121 RDLATYGFLGYPLLQAADVLIYRATQVPVGADQIPHIEMMREIARRFNHLYGKEKGFEEK 180

Query: 181 ALAATKKLGSKRAKLYLELRTQFQEKGDDEALEQAKAMLDDAQNLSMIDRERLFGYLEGS 240
             A  +KL  K+AK Y ELRT +QE+G+ EAL  AK +LD  Q++S  DRERLFGYL G+
Sbjct: 181 VAATLQKLSGKQAKQYKELRTTYQEQGNAEALGWAKTLLDSVQSISETDRERLFGYLAGT 240

Query: 241 RKLILTEPQAMLTEASRLPGLDGAKMSKSYGNAIALREDAATVTKKVKTMPTDPQRVRRS 300
           RK IL EPQA LTE+SR+PGLDG KMSKSYGN+I+LRED  ++TKK++TMPTDP RVRR+
Sbjct: 241 RKQILLEPQARLTESSRMPGLDGQKMSKSYGNSISLREDKESLTKKIRTMPTDPARVRRT 300

Query: 301 DPGDPDKCPVWQFHQVYSTPEVKEWAAKGCRSAGIGCLECKQPVIDAILQEQQPMLERAQ 360
           DPGDP+KCPVWQ H VYS    +EW  KGC SAGIGCLECKQPVI+ +L+EQ+PM ERAQ
Sbjct: 301 DPGDPEKCPVWQLHLVYSDAPTREWVVKGCTSAGIGCLECKQPVIEGVLKEQEPMRERAQ 360

Query: 361 PYLDDPSLVRAIVADGCEKARKLAQDTMRDVREAMGLGY 399
            Y+DDPSLVRAIVADG +KAR LAQ+TMR+VR+AMGLGY
Sbjct: 361 KYIDDPSLVRAIVADGRDKARALAQETMREVRDAMGLGY 399


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 790,673
Number of extensions: 31802
Number of successful extensions: 101
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 315
Effective length of database: 723,567
Effective search space: 227923605
Effective search space used: 227923605
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)