BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3235.p
         (292 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase [H...   494   e-141

>gi|134095359|ref|YP_001100434.1| dihydrodipicolinate synthase
           [Herminiimonas arsenicoxydans]
          Length = 292

 Score =  494 bits (1271), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/292 (80%), Positives = 260/292 (89%)

Query: 1   MIKGSIVAIVTPMHPDGSLDYDGLRKLIDWHIAEGTDSIVIVGTTGESPTVSMEEHCELI 60
           MI+GSIVAIVTPMH DG+LD  GLRKLIDWHIAEGTD IVIVGTTGESPTVS++EHCELI
Sbjct: 1   MIQGSIVAIVTPMHADGALDLPGLRKLIDWHIAEGTDGIVIVGTTGESPTVSVDEHCELI 60

Query: 61  KVAVEHTAKRIPIIAGTGGNSTSEAIELTEFAKKVGADASLQVVPYYNRPTQEGMYLHFK 120
           +VAVEHTAKRIPIIAGTGGNSTSEAIELT+FAK VGADASLQVVPYYNRPTQEGMY HFK
Sbjct: 61  RVAVEHTAKRIPIIAGTGGNSTSEAIELTQFAKDVGADASLQVVPYYNRPTQEGMYQHFK 120

Query: 121 TIAEAVDLPVILYNVPGRTVADMSNETILRLAQVKGIVGVKDATGNIARGSDLIRLAPKS 180
            I EAVDLP ILYNVPGRTVADMSNETILRLAQ+  ++GVKDATGNI+RG DL+RL PK 
Sbjct: 121 KIVEAVDLPAILYNVPGRTVADMSNETILRLAQIPSVIGVKDATGNISRGIDLMRLRPKD 180

Query: 181 FAVYSGDDATAFALMFYGGAGNISVTANVAPRDMHELCVAAMSGNIARAVELNNKLLPLH 240
           FAVYSGDDATA ALM  G  GNISVTAN+APR MH+LC AA++  +A A+ +NNKL+PLH
Sbjct: 181 FAVYSGDDATAMALMLCGANGNISVTANIAPRGMHQLCDAAINQRVAEAIAINNKLVPLH 240

Query: 241 NKLFVEPNPVPVKWAMQEMGLIPTGMRLPLAPLGEAFHDTVRAALRESGVLN 292
           NKLF+EPNPVP+KWAM E+GLIP+GMRLP+ PL   +HD VRAA+RESGVL 
Sbjct: 241 NKLFIEPNPVPLKWAMAEIGLIPSGMRLPIVPLAAEYHDIVRAAMRESGVLQ 292


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 559,757
Number of extensions: 22878
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 211
Effective length of database: 733,452
Effective search space: 154758372
Effective search space used: 154758372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)