BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3234.p
         (393 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095358|ref|YP_001100433.1| putative lipoprotein [Herminiim...   500   e-143

>gi|134095358|ref|YP_001100433.1| putative lipoprotein
           [Herminiimonas arsenicoxydans]
          Length = 382

 Score =  500 bits (1287), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 257/381 (67%), Positives = 304/381 (79%), Gaps = 6/381 (1%)

Query: 16  TLTQRSIVVALALAGLAGCSSIGNMLEGDRIDYKSAEKARGPRLEVPPDLTQLQRDNRYS 75
           +  +R ++  LAL  LAGCSSI +MLE  RIDYKS E  + P LE+PPDLTQLQR+NRY+
Sbjct: 5   SFAKRGMIYVLALTSLAGCSSISSMLEPSRIDYKS-EVKKTPTLEIPPDLTQLQRENRYT 63

Query: 76  IPEANKGVATASGYQLEQQTKPTTDLTSVAPDAQGKDIRIERDGSQRWLVVKQTPEQLWP 135
           +P+AN+G ATAS Y  +Q  +P     +VAP A   D+R+ERDGSQRWLVV QTPE LWP
Sbjct: 64  LPDANRGTATASAYNAQQGARPAEQAATVAPKALS-DVRVERDGSQRWLVVNQTPEALWP 122

Query: 136 QIKDFWQDNGFLINVESPDTGVMETDWAENRAKIPQDFIRNTLGKVFDSLYSTGERDKFR 195
           QIKDFWQDNGFLIN+E+P +GVMETDWAENRAKIPQDFIRN+LGK+FDSLYSTGERDKFR
Sbjct: 123 QIKDFWQDNGFLINLEAPQSGVMETDWAENRAKIPQDFIRNSLGKIFDSLYSTGERDKFR 182

Query: 196 TRLERGPNGTTEIFISHRGAEEVLTGSAKETSVWTARPSDPGLEAEFLSRLMVRLGADAT 255
           TRLER  +G TEI++SHRGAEEVLTG+ KET+VWTARPSDP LEAEFLSRLMV+LG + T
Sbjct: 183 TRLERRGDGATEIYVSHRGAEEVLTGTDKETTVWTARPSDPDLEAEFLSRLMVQLGVEGT 242

Query: 256 KAKAAVANAPSLQARSRLVKTATGTSVQVDEGFDRAWRRIGLALDRVGFTVEDRDRSQGI 315
           +AKAAVAN  +  +R++LVK   G  VQV+E FDRAWRR+GLALDRVGFTVEDRDR+QG+
Sbjct: 243 RAKAAVANVVAQSSRAKLVKNTAGNYVQVEESFDRAWRRVGLALDRVGFTVEDRDRTQGL 302

Query: 316 YYVRYVDQDQDAKDKKDSGFFSRIF---SSKDKDKKAAKYRIVVKGAGSDSSNIVVQNGE 372
           Y+VRYVDQ  DAK  +  GFF  +F   S  +KDK AAKYR+ VKG  +DSS I V N E
Sbjct: 303 YFVRYVDQGDDAKTTEKKGFFGNLFTFGSKAEKDKAAAKYRVSVKGT-ADSSRISVLNNE 361

Query: 373 GGPDTSGISDKILGLLNDQLK 393
           G P+ S   +KIL LLN+QLK
Sbjct: 362 GKPEVSKTGEKILTLLNEQLK 382


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 667,152
Number of extensions: 24783
Number of successful extensions: 43
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 309
Effective length of database: 723,567
Effective search space: 223582203
Effective search space used: 223582203
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)