BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3233.p
         (261 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095357|ref|YP_001100432.1| putative metallo-beta-lactamase...   361   e-101

>gi|134095357|ref|YP_001100432.1| putative metallo-beta-lactamase
           family protein [Herminiimonas arsenicoxydans]
          Length = 261

 Score =  361 bits (926), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 209/261 (80%), Gaps = 5/261 (1%)

Query: 1   MKFASLGSGSEGNALLISAAAGDSRPSSGTTVMLDCGFTLREAEKRMLRLGLDPSDVSAI 60
           +KFASLGSGSEGNALLIS  +G +R    TTVMLDCGF +RE E+R+ RL L P+D++ I
Sbjct: 3   LKFASLGSGSEGNALLISTQSGTTR----TTVMLDCGFGIRETERRLERLQLLPADLAGI 58

Query: 61  VVTHEHSDHVSGVFKFARRYRIPVWLSYGTFQAVAEQASDVDVRFCADGQKIAIGDLELS 120
           +VTHEH DHV GVFKFARR+R+PVWL++GT+QA  ++  DV++  C DG   AIGDLELS
Sbjct: 59  IVTHEHQDHVGGVFKFARRHRLPVWLTFGTYQATRDRCDDVEIHICRDGAVFAIGDLELS 118

Query: 121 PYTVPHDAREPIQYVAGDGDRRLGVLTDAGQPTAHLVQALGACDALLLECNHDREMLERS 180
           PYTVPHDAREP+QYVA DG  RLGVLTDAG  TAHL++AL ACDAL+LECNHD +ML  S
Sbjct: 119 PYTVPHDAREPVQYVASDGALRLGVLTDAGHATAHLIEALAACDALMLECNHDIQMLRDS 178

Query: 181 PYPAFLKRRIGGDYGHLANDASAEILRLLDRSRLKRVIGAHLSQQNNTPELARAAIESVL 240
            YP  LK+RIGGDYGHL+N  + EIL  LD+SRLKRV+GAHLS +NNTPELARAA+   +
Sbjct: 179 AYPPSLKQRIGGDYGHLSNQMAGEILSGLDKSRLKRVVGAHLSLKNNTPELARAALTDAV 238

Query: 241 GHTFGDIGIACQEEGFSWLDV 261
                ++ IACQEEGF+WL+V
Sbjct: 239 TERI-EVMIACQEEGFAWLEV 258


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 536,364
Number of extensions: 22556
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 181
Effective length of database: 736,747
Effective search space: 133351207
Effective search space used: 133351207
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)