BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3231.p
         (388 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095355|ref|YP_001100430.1| hypothetical protein HEAR2170 [...   526   e-151

>gi|134095355|ref|YP_001100430.1| hypothetical protein HEAR2170
           [Herminiimonas arsenicoxydans]
          Length = 373

 Score =  526 bits (1356), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 251/372 (67%), Positives = 296/372 (79%)

Query: 14  MKKLDLLGGITPAQFLRDYWHKKPLLIRNAIPGFTAPLPRQELFDLARRDEVESRLITHR 73
           MKKL LLGGIT A+FLRDYWHKKPLLIR AIP F A L R+ELFDL + DEVESRLIT  
Sbjct: 1   MKKLTLLGGITAAEFLRDYWHKKPLLIRQAIPAFQALLSREELFDLVKSDEVESRLITQH 60

Query: 74  SDGWDMQHGPFNKLPPLKQKAWTLLVQGVNLHHPAADALLRQFRFVPDARLDDLMISYAT 133
            + W M  GPF ++PPLKQK WTLLVQGVNLH  A DAL+RQF FVPDARLDDLMISYAT
Sbjct: 61  KNQWKMDSGPFEQVPPLKQKNWTLLVQGVNLHDDAVDALMRQFDFVPDARLDDLMISYAT 120

Query: 134 DGGGVGPHFDSYDVFLLQAHGQRRWRISAQDDLTLEEGVPLKILSHFQAEQEFVLEPGDM 193
           + GGVG HFDSYDVFLLQAHG RRWRISAQ DLTL +G+PLKIL +FQAEQEF+L PGDM
Sbjct: 121 ETGGVGAHFDSYDVFLLQAHGHRRWRISAQTDLTLVDGMPLKILKNFQAEQEFILAPGDM 180

Query: 194 LYLPPHYAHDGVAVGECMTYSIGFRAPTYQELGESFLEFMMDTIDLPGRYADPDLKTSAK 253
           LYLPP YAH+GVA+ ECMTYSIGFRAP+YQELGE+FLE M+D+IDLPGRYADP+LK   +
Sbjct: 181 LYLPPQYAHEGVAMDECMTYSIGFRAPSYQELGEAFLESMIDSIDLPGRYADPELKVPKQ 240

Query: 254 PAELQLDMLTRIREELNKIRFTDDDITIFLGQHLSEPKPSVFFEAPTEEMSFARFFQGAK 313
            AE+   MLTR+  ELNK+ FT +DI +FLG++LSEPK  ++F+AP   ++ ARF Q AK
Sbjct: 241 RAEISRAMLTRVTSELNKVSFTPEDIALFLGEYLSEPKAHIYFDAPEPILTAARFAQKAK 300

Query: 314 KRGLVLHRKTRMLYRGSHVFINGESFQVGRADKVILAKLADHRTLEKTDFAQASEDLLEA 373
           K G+ L RKT+ML+  +++FING SF+VG  D  IL  LA+ R+L       AS D++EA
Sbjct: 301 KNGVRLSRKTQMLHHNNYIFINGTSFEVGPEDLTILQVLANERSLSAALLVTASPDVIEA 360

Query: 374 LHQWHESGWLEI 385
           LH WH+ GWL +
Sbjct: 361 LHTWHQDGWLTL 372


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 778,179
Number of extensions: 32622
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 305
Effective length of database: 726,862
Effective search space: 221692910
Effective search space used: 221692910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)