BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3228.p
         (897 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095352|ref|YP_001100427.1| DNA mismatch repair protein Mut...  1365   0.0  

>gi|134095352|ref|YP_001100427.1| DNA mismatch repair protein MutS
           [Herminiimonas arsenicoxydans]
          Length = 870

 Score = 1365 bits (3534), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 686/887 (77%), Positives = 766/887 (86%), Gaps = 26/887 (2%)

Query: 11  MMQQYLRIKADHPNTLVFYRMGDFYELFFEDAEKASRLMGVTLTQRGSSNGNPIKMAGVP 70
           MMQQYLRIKA+HP TL+FYRMGDFYE+FFEDAEKASRL+G+TLTQRGSSNGNPIKMAGVP
Sbjct: 1   MMQQYLRIKAEHPETLLFYRMGDFYEVFFEDAEKASRLLGITLTQRGSSNGNPIKMAGVP 60

Query: 71  FHSVEQYLARLIKLGESVAICEQIGDPATSKGPVERKVVRVVTPGTLTDSDLLPEKAERC 130
           FH+V+QYL++L+KLGES+A+CEQIGDPATSKGPVERKV+RV+TPGTL+DSDLLPEK+E+ 
Sbjct: 61  FHAVDQYLSKLVKLGESIALCEQIGDPATSKGPVERKVLRVITPGTLSDSDLLPEKSEQP 120

Query: 131 LLAMQLLPSKSRKQMQVGLAWLSMASGALKMMEFTVEAHLLDGRVKQELERISAAEVLVA 190
           LLA  L  +  RK + +GLAWLSMASGALK+MEFT +A     R+K ELERI+ AEVL+ 
Sbjct: 121 LLA--LYSTTQRKTITIGLAWLSMASGALKLMEFTTDARNAATRLKHELERIAPAEVLLP 178

Query: 191 EGQLEQCEPLLP-NRAVTVPDWHFDQPSSEKALLDQLGVATLHGFGADGLGPAICAAGAL 249
            G ++  +      +  TVPDWHFD     KAL +QL V+TL GFGA+ L  AI AAGAL
Sbjct: 179 -GSIDGPDSDYAFAKNTTVPDWHFDIAHGSKALHEQLKVSTLTGFGAEHLNAAIGAAGAL 237

Query: 250 LRYAQSTQGRGLQHVRTLTVESENEFIGLDAATRRNLELTETIRAQDANTLAPTLFSTLD 309
           LRYAQ+TQG+GLQHVR LTVE+ENEFIGLDAATRRNLELTETIR QD N+   TLFS LD
Sbjct: 238 LRYAQATQGKGLQHVRALTVETENEFIGLDAATRRNLELTETIRGQDNNS--ATLFSLLD 295

Query: 310 HCRTAMGSRLLRHWLHHALRDQQVARARHAAINALMRTDACSGLSATLAAVPDIERITTR 369
           HCRTAMGSRLLRHWLHHA RDQ VARARHAAINALMRTDAC+GL++TLA+VPD+ERI TR
Sbjct: 296 HCRTAMGSRLLRHWLHHARRDQAVARARHAAINALMRTDACTGLASTLASVPDVERIATR 355

Query: 370 IALLSARPRDLAGLRAGLQQLGSLRAYVEMCARDAEAPLLEQLHDDLATPVECLDLLERA 429
           IAL SARPRDLAG+R GLQQL SLRAYV MC +DA+APLL+ +HD LATP ECLDL+ERA
Sbjct: 356 IALQSARPRDLAGMRGGLQQLPSLRAYVSMCNQDADAPLLKTIHDALATPSECLDLVERA 415

Query: 430 IMLDPAAMVRDGGVIARGFDAELDELRGLSENAGQYLLELEARERERTGIANLRVEYNKV 489
           I L+PAAMVRDGGVIARGFDAELDELRGLSENAGQ+L++LE RER RTGI NLRVEYNKV
Sbjct: 416 IALEPAAMVRDGGVIARGFDAELDELRGLSENAGQFLVDLETRERTRTGINNLRVEYNKV 475

Query: 490 HGFYIEVTHGQTDKVPEDYRRRQTLKNAERYIIPELKAFEDKALSAQERSLSREKFLYEQ 549
           HGFYIEVTHGQTDKVP+DYRRRQTLKNAERYI PELKAFEDKALSAQER+L+REK+LY+Q
Sbjct: 476 HGFYIEVTHGQTDKVPDDYRRRQTLKNAERYITPELKAFEDKALSAQERALAREKYLYDQ 535

Query: 550 LLNDMGVHIVRLQAIAHALAQLDTLVALADHAVRNNWCAPQLVAEPCIQIEQGRHPVVEN 609
           +L  M  HI  LQ IAHALAQLDTLVALA+HA+R+NWCAPQL+AEP I IEQGRHPVVEN
Sbjct: 536 VLQQMAQHIGTLQNIAHALAQLDTLVALAEHALRHNWCAPQLIAEPTIAIEQGRHPVVEN 595

Query: 610 QIERFIANDCQLAAERKLLLITGPNMGGKSTFMRQVALITLLAYVGSFVPATSAVIGPID 669
            IERFIANDC L  E +LLLITGPNMGGKST+MRQVALITLLAYVGSFVPATSA IGPID
Sbjct: 596 HIERFIANDCLLNNESRLLLITGPNMGGKSTYMRQVALITLLAYVGSFVPATSATIGPID 655

Query: 670 RIFTRIGAADDLAGGRSTFMVEMTESASILNNATEHSLVLMDEVGRGTSTFDGLALAWAI 729
           RIFTRIGAADDLAGGRSTFMVEMTESA+ILN ATE+SLVLMDEVGRGTSTFDGLALAWAI
Sbjct: 656 RIFTRIGAADDLAGGRSTFMVEMTESAAILNGATENSLVLMDEVGRGTSTFDGLALAWAI 715

Query: 730 AKHLIDVTRSFTLFATHYFELTQLPDIHPSAANVHLSAVEHKDSIVFLHAVQSGPASQSY 789
           A+HLID TRSFTLFATHYFELTQLP++HPSAANVHLSAVEHKDSIVFLHAVQ+GPASQSY
Sbjct: 716 ARHLIDSTRSFTLFATHYFELTQLPEVHPSAANVHLSAVEHKDSIVFLHAVQAGPASQSY 775

Query: 790 GLQVAQLAGVPAPVIRAARKHLSALESQSMQPTSQFDLFSTPAFTEPASEDEAEAEALDD 849
           GLQVAQLAGVP  VIRAARKHL+ LE+ SMQ T QFDLF+ P    P S+ E        
Sbjct: 776 GLQVAQLAGVPQAVIRAARKHLATLEANSMQATPQFDLFADPDHLIPTSDVET------- 828

Query: 850 ERAAPEAVQADALAQ--ALLQSLAGIDPDALTPRQALEALYQLKALS 894
                      A+AQ  AL ++LA I+PDAL+PR AL+ALY+LK LS
Sbjct: 829 -----------AMAQPSALDEALADINPDALSPRDALDALYRLKELS 864


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,491,312
Number of extensions: 57114
Number of successful extensions: 215
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 897
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 807
Effective length of database: 703,797
Effective search space: 567964179
Effective search space used: 567964179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 133 (55.8 bits)