BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3226.p
         (411 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094219|ref|YP_001099294.1| multidrug resistance secretion ...   280   6e-77

>gi|134094219|ref|YP_001099294.1| multidrug resistance secretion
           protein; putative periplasmic linker protein
           [Herminiimonas arsenicoxydans]
          Length = 398

 Score =  280 bits (717), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 166/359 (46%), Positives = 223/359 (62%), Gaps = 28/359 (7%)

Query: 28  NTQKRKKLFAIFGGVVAIVAVGYGAYWYLIGSRYVETDNAYTGTEVATVTPAINGIVAAV 87
           N  KR++   I   ++ ++ + YG +W +    +  TD+AY    V  VTP + G V A+
Sbjct: 15  NNGKRRRHLIIVSILLVLLLIAYGLWWAIYARHFEGTDDAYVAGNVVQVTPQVGGTVVAI 74

Query: 88  DVVDTQAVKKGDVLVRIDDADAKLAVDQAAADLDRTERKVRGYFANDAGLAAQVLAREAD 147
              DT+ V  G  LV +D +DAK+A++QA A L +T R+VR  F N+  L A V  R AD
Sbjct: 75  HADDTELVHAGMPLVELDHSDAKVALNQAEAQLAQTVREVRTLFVNNGTLNANVALRVAD 134

Query: 148 QKRASAQLLSAQADLQRAQIDLQRREALAKSGSVSGEELTNARTALLTAQANLKAAEAAE 207
             RA A L   Q               L+ +G+VS E+L +AR+AL TA++ L+A     
Sbjct: 135 VARARADLARRQE--------------LSGTGAVSKEDLEHARSALQTAESALQA----- 175

Query: 208 VQSRANIKATQGAQKASTVLTADTTVEDNPEVVLARAKLDQAKLDLERTVLRSPVDGVIA 267
             +R  + + Q       VLT  T+V  +P V  A A++  A L L R  L +P+ G +A
Sbjct: 176 --TREQLASNQ-------VLTDRTSVASHPNVQRAAAQVQAAYLALARNTLPAPITGYVA 226

Query: 268 RRQVQVGQRVQSGASLLSVVPMQQMHVDANFKEGQLTKVRIGQPVTMTSDLYGGSVEYHG 327
           +R VQVGQRV  G  LLS+VP+  + VDANFKE Q+ ++RIGQPVT+ SDLYG SVEYHG
Sbjct: 227 KRSVQVGQRVAPGTPLLSIVPLTTLWVDANFKEVQVARMRIGQPVTLHSDLYGSSVEYHG 286

Query: 328 VVTGLSGGTGSAFAVIPAQNATGNWIKVVQRLPVRISLDPKELAQHPLSVGLSMVVEID 386
            V GLS GTG+AFA++P QNA+GNWIKVVQR+PVRI+LDPKEL + PL VGLSM VE+D
Sbjct: 287 KVAGLSAGTGAAFALLPTQNASGNWIKVVQRIPVRIALDPKELTERPLRVGLSMQVEVD 345


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.126    0.335 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 493,714
Number of extensions: 13326
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 4
Length of query: 411
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 327
Effective length of database: 723,567
Effective search space: 236606409
Effective search space used: 236606409
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 130 (54.7 bits)