BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3225.p (515 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094218|ref|YP_001099293.1| hypothetical protein HEAR0984 [... 265 5e-72 gi|134095761|ref|YP_001100836.1| putative outer membrane transpo... 172 5e-44 gi|134095881|ref|YP_001100956.1| outer membrane transport protei... 150 1e-37 gi|134095560|ref|YP_001100635.1| outer membrane transport protei... 135 4e-33 gi|134095533|ref|YP_001100608.1| putative RND efflux system, out... 132 3e-32 >gi|134094218|ref|YP_001099293.1| hypothetical protein HEAR0984 [Herminiimonas arsenicoxydans] Length = 501 Score = 265 bits (676), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 192/477 (40%), Positives = 268/477 (56%), Gaps = 11/477 (2%) Query: 30 AAVLAAALMAGCASFTDLGPRAEPKSIDHYQSSQSLAASALQATWPSDQWWTVYGDAQLN 89 AA A L++ CASF + A + Y ++ SL WP W G A L Sbjct: 17 AASCAVVLLSACASFKGIDSSARLQQPGDYATAASLPDQ--HGQWPDASWAHTIGGASLQ 74 Query: 90 SLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQSYNNGFPPALV 149 +LIDEA+ P++ +A AR+ A A+ GAA P S N + + S N PP Sbjct: 75 ALIDEAIAGNPNLQIAAARVAAARAVAEAAGAASSPAWSANFKSTYQRFSENYIIPP--- 131 Query: 150 PHG--YNNETRTSLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITLATSIASAYA 207 P+ Y ++ +L+FSY+ DFWG++ A L +A S+ +A++A+ AR+ +ATS+A A+ Sbjct: 132 PYAGSYQSDNSLTLNFSYDFDFWGRHAAELRSALSQDKAAQAEQYNARLVIATSVAHAWI 191 Query: 208 ELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRAIAQADLKATDES 267 +LA+LYAQ D N+ L+V + L + RF GL+ + Q + A A+ + E Sbjct: 192 QLARLYAQLDLNQQQLEVSSKMAHLTQLRFKAGLDAKSENQQTRQQVASLGAEREQLQEQ 251 Query: 268 IALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQLPVELLGRRPDIVAARLRAEAA 327 IAL RN+LAAL G GPDRG Q+ RP + LP LP+ LLGRRPDIVAAR + EAA Sbjct: 252 IALTRNQLAALLGQGPDRGRQIERPTLPADVATALPDALPLALLGRRPDIVAARWQVEAA 311 Query: 328 GKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISLPIFNGGRLRGQFR 387 I AR AFYPNVNL A+ GF S+GLS L +SGS + +GPA+S+PI G LR + Sbjct: 312 DGGIAAARTAFYPNVNLMAFAGFSSIGLSNLLQSGSRVVGIGPAVSVPILEGRTLRANLK 371 Query: 388 SASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAADAADEAYRIVSNRYN 447 A YD VA Y++A+T AL DVAD S +A+ + + A AA + R Sbjct: 372 GRVAEYDGMVATYNRALTDALHDVADQVASMRAVALQSEQQQRATQAAAGNLDLAQQRER 431 Query: 448 GGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGGYRAADNSKSQDSA 504 G N L L+A TL++ R DL++R L V L++ALGGG+ +++SQD A Sbjct: 432 VGTTNMLPALSAHMTLLAQRRMDLDLQARRSDLRVGLIKALGGGF----DAQSQDLA 484 >gi|134095761|ref|YP_001100836.1| putative outer membrane transport protein involved in copper (silver) tolerance (cusC) [Herminiimonas arsenicoxydans] Length = 502 Score = 172 bits (435), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 140/418 (33%), Positives = 211/418 (50%), Gaps = 13/418 (3%) Query: 79 WWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLD--HM 136 W + DA+L LI +AL++ + A R+ +A A Q A P ++ A + H+ Sbjct: 66 WRDYFTDARLQDLIAQALENNRDLRAAVLRVEEARAAYGIQRAEQFPAIAAQAGSERAHV 125 Query: 137 KQSYNNGFPPALVPHGYNNETRTSLDF-SYEIDFWGKNRAALAAATSELEASRADAAQAR 195 + PA+ +++ SL S+EIDFWG+ R+ AA AS Sbjct: 126 PADLSLTGKPAM-----SSQYHVSLGLASWEIDFWGRVRSLRDAALENYLASDEARRAVT 180 Query: 196 ITLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRA 255 I+L +A++Y L +L + + R E+L +F +R G +R ++ Q++ + Sbjct: 181 ISLVAQVANSYLALCELDERIALARLTIASREESLRIFTRRVEVGSTSRLNLTQVQTLLS 240 Query: 256 IAQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQ--LPVELLGR 313 AQA +++ ALQ N L L G + L ++D + LP Q LP +LL R Sbjct: 241 QAQALGAQLEQARALQANALILLVGVTLE--LPATSSRLD-ERQMLLPLQPGLPSDLLIR 297 Query: 314 RPDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAIS 373 RPDIVAA + +AA QI ARAAF+P + L+ G S L L +GS + P+IS Sbjct: 298 RPDIVAAEHQLKAAHAQIGAARAAFFPRIALTGSFGTASAELDGLFAAGSRAWTFAPSIS 357 Query: 374 LPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAAD 433 LP+F+ GR A A D AVANY++ + A +DVAD + + L +L +AA Sbjct: 358 LPLFDAGRRSNNLSLAEARRDLAVANYEKTIQAAFRDVADALAARQWLAQQLLIAQAALT 417 Query: 434 AADEAYRIVSNRYNGGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVRALGGG 491 E R+ RY+ G A YLDVL+AQ L+ +QL +R + + V+L ALGGG Sbjct: 418 TQTERARLSQLRYDNGAAAYLDVLDAQRDLLVAEQQLVQIRRALLSSQVSLYAALGGG 475 >gi|134095881|ref|YP_001100956.1| outer membrane transport protein involved in copper (silver) tolerance [Herminiimonas arsenicoxydans] Length = 474 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 133/425 (31%), Positives = 205/425 (48%), Gaps = 27/425 (6%) Query: 79 WWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQ 138 W + D +L +LI AL + + VA R+ +A Q A LLP ++G + + Sbjct: 53 WRNFFPDQRLQALIGAALANNRDLRVAALRIEEARAQYNIQSADLLPNLNGTFTGSRART 112 Query: 139 SYNNGFPPALVPHGYNNET---RTSLDF-SYEIDFWGK----NRAALAAATSELEASRAD 190 P ++ P G ++ + + L S+E+DF+G+ N AALA+ + EA RA Sbjct: 113 ------PASISPTGIDSVSSAYQVGLSLASFELDFFGRVHSLNDAALASYLATEEAQRA- 165 Query: 191 AAQARITLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQM 250 A I+L +A AY Q ++ LK R DL KQRF G S + + Sbjct: 166 ---AHISLVAEVAKAYLAERAFAEQLALAQSTLKSRGTAYDLAKQRFEVG---ASSALDL 219 Query: 251 EARRAIAQADLKATDESIALQR----NKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQL 306 A+ Q+ + ++A QR N L L G P G A+P + +P L Sbjct: 220 RQNEALLQSA-RVAQVTLARQRAQALNALTLLVG-QPLTGFPEAQPLSAQNIVTDIPAGL 277 Query: 307 PVELLGRRPDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIG 366 P +LL +RPDI +A AA I ARAAF+P ++L+A IG S LS L SG+ Sbjct: 278 PSDLLTQRPDIRSAEQSLLAANANIGAARAAFFPRISLTAGIGTASSTLSNLFDSGTRAW 337 Query: 367 SVGPAISLPIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLA 426 + P + LPIF+ GR + + A+ANY++++ A ++V+D V+ L ++ Sbjct: 338 TFAPQLVLPIFDAGRNSANLTLSEVRKNIAIANYEKSIQSAFREVSDALVARDLLEEQID 397 Query: 427 DVKAAADAADEAYRIVSNRYNGGLANYLDVLNAQDTLISNLRQLSDLRSRMFTLDVALVR 486 + +A E ++ R+ G+A+ LDVL+AQ L S + L R T + L R Sbjct: 398 AQRRVQEAQAERLKLADQRFQNGIASSLDVLDAQRELFSAEQDLVQARLLRLTNAIDLYR 457 Query: 487 ALGGG 491 +LGGG Sbjct: 458 SLGGG 462 >gi|134095560|ref|YP_001100635.1| outer membrane transport protein involved toxic tolerance [Herminiimonas arsenicoxydans] Length = 476 Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 123/419 (29%), Positives = 189/419 (45%), Gaps = 20/419 (4%) Query: 79 WWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLDHMKQ 138 W + D +L LI AL + + VA + +A Q Q A P + G+ + + Sbjct: 68 WRDFFVDPKLEELIARALHNNRDLRVAVLNVERARAQYQIQNAERFPALDGSVARNRSGG 127 Query: 139 SYNNGFPPALVPHGYNNETRTSLDFSYEIDFWGKNRAALAAATSELEASRADAAQARITL 198 + N P Y + +L S+E+D +G+ AA + A A+++L Sbjct: 128 NVVN-------PGDYYS---AALSASFELDLFGRIHNLSQAALEQYFAQEEGQRSAQLSL 177 Query: 199 ATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARRAIAQ 258 IA+ Y A + +A + DL +R G + + Q + A+ Sbjct: 178 IAEIANTYLTFAADLESQRIAQATFDNQQIAYDLVVKRHRAGAVSGLDLSQAQTTIETAR 237 Query: 259 ADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQLPVELLGRRPDIV 318 AD+ +A RN L L GA + L + +S LP QLP ++L RRPD+ Sbjct: 238 ADVARYAGLVATDRNALTLLVGAPVEDSLLPQGFDLKVSGIAPLPAQLPSQVLLRRPDVR 297 Query: 319 AARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISLPIFN 378 A I ARAAF+P+++L+ +G S LS L SG+ S P ISLPIF+ Sbjct: 298 QTEHVLRGANANIGAARAAFFPSISLTGSVGSASNQLSGLFDSGTKFWSFVPQISLPIFH 357 Query: 379 GGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAADAADEA 438 GG LR A+A D A+A Y++A+ ++VAD L R +A DAA A Sbjct: 358 GGALRANLGVATADRDIALARYEKAIQSGFREVADALALTSTLAQRRQAQQALLDAASRA 417 Query: 439 YRIVSNRYNGGLANYLDVLNAQDTLISNLR-----QLSDLRSRMFTLDVALVRALGGGY 492 Y + RY G ++L +L+AQ T + + QL++ +R V L + LGGG+ Sbjct: 418 YDLSKARYQYGRDSFLILLDAQRTFYTAQQSLVAAQLAEQGNR-----VTLYKVLGGGW 471 >gi|134095533|ref|YP_001100608.1| putative RND efflux system, outer membrane lipoprotein, NodT [Herminiimonas arsenicoxydans] Length = 499 Score = 132 bits (333), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 119/422 (28%), Positives = 196/422 (46%), Gaps = 12/422 (2%) Query: 76 SDQWWTVYGDAQLNSLIDEALQSAPSMAVAKARLMKAEGAAQQQGAALLPEVSGNASLD- 134 S WW ++ A L +D +L++ S+ A+A L +++ Q P++ G+ S Sbjct: 66 SADWWNLFHSADLGEAVDRSLRNNASLQAAQASLKESQHNLQAGYGVFFPQIGGSFSATR 125 Query: 135 HMKQSYNNGFPPALVPHGYNNETRTSLDFSYEIDFWGKNRAALAAATSELEASRADAAQA 194 + ++ G + P G N SY +D +G R + A ++ + + A Sbjct: 126 QLPSAFRFG---SASPVGIFNLFTLGAAISYTLDIFGGERRMVEALGAQADYQKYVALAT 182 Query: 195 RITLATSIASAYAELAQLYAQRDTNEAALKVRVETLDLFKQRFANGLETRGSVMQMEARR 254 +TL+ ++ + A +AQ + + + + E L + + + A+G+ +V+ + + Sbjct: 183 YLTLSGNVVNTAIARAAYHAQYEATQQLILRQQEQLAVAENQAAHGIAPYATVLSLRSLL 242 Query: 255 AIAQADLKATDESIALQRNKLAALAGAGPDRGLQLARPQIDLSKPFGLPQQLPVELLGRR 314 A +QA L + + LA L G + L P LP LP EL+ +R Sbjct: 243 ASSQAALAVVAQKRDQADHLLANLQGTTASGTYTSSFDLAQLELPQDLPLTLPSELVRQR 302 Query: 315 PDIVAARLRAEAAGKQIKVARAAFYPNVNLSAYIGFQSLGLSMLTRSGSDIGSVGPAISL 374 PD++AA + A + VA AA +P+ +L A + L L+ S S SVG + + Sbjct: 303 PDVLAAEAQLHVASAGVGVATAALFPSFSLGANYALGNTKLGNLSDSSSKFWSVGSGVDV 362 Query: 375 PIFNGGRLRGQFRSASASYDEAVANYDQAVTQALQDVADVGVSEKALTGRLADVKAAAD- 433 PIF GG + R+A +Y +A+ANY Q V A Q VADV A+ VKA A+ Sbjct: 363 PIFQGGTAWHKRRAAQDAYQQALANYRQTVLSAFQQVADV---LTAIEHDAQAVKAQAES 419 Query: 434 --AADEAYRIVSNRYNGGLANYLDVLNAQDTLI-SNLRQLSDLRSRMFTLDVALVRALGG 490 AA++ +++ Y GL +YLDVL A S + L L R + AL ALGG Sbjct: 420 LGAAEQTLKLIEVNYRAGLVSYLDVLAANTQFYQSKIAYLQALGLR-YQDTTALFVALGG 478 Query: 491 GY 492 G+ Sbjct: 479 GW 480 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.127 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 792,559 Number of extensions: 27664 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 10 Length of query: 515 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 429 Effective length of database: 716,977 Effective search space: 307583133 Effective search space used: 307583133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)