BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3222.p
         (362 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094410|ref|YP_001099485.1| hypothetical protein HEAR1181 [...    55   6e-09

>gi|134094410|ref|YP_001099485.1| hypothetical protein HEAR1181
           [Herminiimonas arsenicoxydans]
          Length = 355

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 132/339 (38%), Gaps = 75/339 (22%)

Query: 20  LVTVAQIQGSTPREPGARMVYSADQ-QFDTIGGGHLEWRAAQIARAMLDTDAASLPGQRR 78
           LVTV Q  GS+PR  GA MV   D     ++ GG +E     IAR   D    ++P    
Sbjct: 24  LVTVVQTWGSSPRPVGAMMVIRHDGCVIGSVSGGCIE--DDLIARVRKDGITRTMP---- 77

Query: 79  LERIALGPS------LGQCCGGVVVLCFERIGADEEALRTWQVLEQSWCRGNDLWRAVPL 132
            E +  G S       G  CGG + L  E + +D+  ++              L   V  
Sbjct: 78  -ELVTYGISADEAHRFGLPCGGTIQLAIEPL-SDKSGIK-------------QLLTHVMR 122

Query: 133 DQIHAQQLHAIDGR-NCQPDVPDHGLPPMDLRDVRQTHLLRDRHGHRWLLDLCRAHQPQV 191
            ++  +QL  + G     P   D  L   DL       +L   HG RW          ++
Sbjct: 123 HELVKRQLDLVSGEVRLVPGTTDAAL---DL----TFGVLSTIHGPRW----------RL 165

Query: 192 VLFGAGHVGAAIVKVLSTLPCRVLWVDEREDM--------------FPPDLPAQIRIEAT 237
           ++ GAG +   + ++ + L   V+  D RE+                P DL   ++I++ 
Sbjct: 166 LIIGAGQLSQFLAQIATGLDYHVVVCDPREEYRLTWQVNGVEVIHAMPDDLVIDMKIDSR 225

Query: 238 DVPNAAVDMAEPGAYYLVMTHSHALDQQLTERILKRQDIAWFGLIGSITKRKQFEHRLAV 297
                           + +TH   LD       LK +   + G IGS     +   RL  
Sbjct: 226 -------------TAVVALTHDPKLDDLALMEALKSEAF-YVGAIGSRINNARRRERLKE 271

Query: 298 RGFGAAELERITCPIGIPGIYGKEPASIAIAVVAQLMQL 336
                 +L+R+  PIG+  I  K PA IAI+++A+L  +
Sbjct: 272 FDLSDEQLQRLHGPIGLY-IGSKTPAEIAISILAELTAI 309


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 767,481
Number of extensions: 32888
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 279
Effective length of database: 726,862
Effective search space: 202794498
Effective search space used: 202794498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)