BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3217.p (290 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095307|ref|YP_001100382.1| transposase [Herminiimonas arse... 298 2e-82 gi|134094784|ref|YP_001099859.1| transposase [Herminiimonas arse... 298 2e-82 gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arse... 254 3e-69 gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arse... 254 3e-69 gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arse... 254 3e-69 >gi|134095307|ref|YP_001100382.1| transposase [Herminiimonas arsenicoxydans] Length = 301 Score = 298 bits (764), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/288 (52%), Positives = 197/288 (68%), Gaps = 1/288 (0%) Query: 3 YAFIVAHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVY 62 Y FI +H + +V +MC+ + V SGYYAW P S+R +E+ RLL LI+ S++ S G+Y Sbjct: 14 YKFIESHRDEFSVISMCQALDVERSGYYAWLKNPLSDRAQEDARLLKLIRASFMASHGIY 73 Query: 63 GYRKIAADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRAGRYGKPAVIAPNHLQQKFDV 122 G ++ DLR+ GE C KHRV RLMR GL+ GYR R KP+ + PN LQ++F V Sbjct: 74 GAPRVFQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIPNLLQRQFTV 133 Query: 123 PAPNLAWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRS 182 PN AWVTDITYIRT +GWLYLAVV+DLFSR+V+GW++ I R L +DA+ AV R Sbjct: 134 TRPNEAWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRR 193 Query: 183 PEQEVIVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRR 242 P + ++HSDQG+Q+ S W+ F K+++L PSMSRR NC DNAV ESFF LK+ER+K+ Sbjct: 194 P-RHTLIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERVKKH 252 Query: 243 IYADRNEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQYFNRLESV 290 IYADR A D+ +YI+ FYN RRHS+ G VSP FE + R +V Sbjct: 253 IYADRETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRRKSAV 300 >gi|134094784|ref|YP_001099859.1| transposase [Herminiimonas arsenicoxydans] Length = 301 Score = 298 bits (764), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 150/288 (52%), Positives = 197/288 (68%), Gaps = 1/288 (0%) Query: 3 YAFIVAHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGGVY 62 Y FI +H + +V +MC+ + V SGYYAW P S+R +E+ RLL LI+ S++ S G+Y Sbjct: 14 YKFIESHRDEFSVISMCQALDVERSGYYAWLKNPLSDRAQEDARLLKLIRASFMASHGIY 73 Query: 63 GYRKIAADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRAGRYGKPAVIAPNHLQQKFDV 122 G ++ DLR+ GE C KHRV RLMR GL+ GYR R KP+ + PN LQ++F V Sbjct: 74 GAPRVFQDLRERGELCSKHRVARLMRENGLRALHGYRIRHIPVSKPSPLIPNLLQRQFTV 133 Query: 123 PAPNLAWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLMAVWRRS 182 PN AWVTDITYIRT +GWLYLAVV+DLFSR+V+GW++ I R L +DA+ AV R Sbjct: 134 TRPNEAWVTDITYIRTWQGWLYLAVVMDLFSRKVVGWAVRPTIHRELVLDAIAKAVRSRR 193 Query: 183 PEQEVIVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKRERIKRR 242 P + ++HSDQG+Q+ S W+ F K+++L PSMSRR NC DNAV ESFF LK+ER+K+ Sbjct: 194 P-RHTLIHSDQGTQYGSDAWRRFCKANHLEPSMSRRANCWDNAVVESFFSSLKKERVKKH 252 Query: 243 IYADRNEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQYFNRLESV 290 IYADR A D+ +YI+ FYN RRHS+ G VSP FE + R +V Sbjct: 253 IYADRETATLDLAEYIDDFYNGVRRHSHLGGVSPNTFETAHRRRKSAV 300 >gi|134095428|ref|YP_001100503.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 254 bits (650), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 180/286 (62%), Gaps = 6/286 (2%) Query: 1 VKYAFIVAHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGG 60 +K+ F+ H V C + V SG+YAW R +R EN +L + S+++S Sbjct: 1 MKFGFVAKHRGIWPVALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDR 60 Query: 61 VYGYRKIAADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHL 116 YG R++ DL G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L Sbjct: 61 TYGARRVWHDLLASGYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVL 118 Query: 117 QQKFDVPAPNLAWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLM 176 ++FD APN WV D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+M Sbjct: 119 DRQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMM 178 Query: 177 AVWRRSPEQEVIVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKR 236 AVWRR + V+ HSD+GSQ++S +Q L + SMSR GN DN+ ESFF LK Sbjct: 179 AVWRRGKPESVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKT 238 Query: 237 ERIKRRIYADRNEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 282 ER+ R+++ R++ R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 239 ERLSRKMFRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 >gi|134095379|ref|YP_001100454.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 254 bits (650), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 180/286 (62%), Gaps = 6/286 (2%) Query: 1 VKYAFIVAHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGG 60 +K+ F+ H V C + V SG+YAW R +R EN +L + S+++S Sbjct: 1 MKFGFVAKHRGIWPVALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDR 60 Query: 61 VYGYRKIAADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHL 116 YG R++ DL G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L Sbjct: 61 TYGARRVWHDLLASGYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVL 118 Query: 117 QQKFDVPAPNLAWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLM 176 ++FD APN WV D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+M Sbjct: 119 DRQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMM 178 Query: 177 AVWRRSPEQEVIVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKR 236 AVWRR + V+ HSD+GSQ++S +Q L + SMSR GN DN+ ESFF LK Sbjct: 179 AVWRRGKPESVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKT 238 Query: 237 ERIKRRIYADRNEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 282 ER+ R+++ R++ R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 239 ERLSRKMFRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 >gi|134095299|ref|YP_001100374.1| transposase [Herminiimonas arsenicoxydans] Length = 288 Score = 254 bits (650), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 180/286 (62%), Gaps = 6/286 (2%) Query: 1 VKYAFIVAHEPQHAVRTMCRVMRVHPSGYYAWKARPESERTKENRRLLGLIKQSWLESGG 60 +K+ F+ H V C + V SG+YAW R +R EN +L + S+++S Sbjct: 1 MKFGFVAKHRGIWPVALTCDTLGVSRSGFYAWLTRTPCKRRTENEQLGRAVHHSFIQSDR 60 Query: 61 VYGYRKIAADLRDLGERCGKHRVYRLMRTEGLKCQTGYRRRA---GRYGKPAV-IAPNHL 116 YG R++ DL G RCG HRV RLM+ + L+ + RRR+ R +P + IA N L Sbjct: 61 TYGARRVWHDLLASGYRCGLHRVERLMQAQALRARP--RRRSLPIDRGERPVIGIAANVL 118 Query: 117 QQKFDVPAPNLAWVTDITYIRTHEGWLYLAVVLDLFSRQVIGWSMGSRIDRNLAMDALLM 176 ++FD APN WV D TYI + EGWLYLAVVLDL+SR+VIGWSM ++ L DAL+M Sbjct: 119 DRQFDASAPNRKWVADFTYIWSAEGWLYLAVVLDLYSRRVIGWSMKPEMNAQLVADALMM 178 Query: 177 AVWRRSPEQEVIVHSDQGSQFSSHDWQAFLKSHNLVPSMSRRGNCHDNAVAESFFQLLKR 236 AVWRR + V+ HSD+GSQ++S +Q L + SMSR GN DN+ ESFF LK Sbjct: 179 AVWRRGKPESVMHHSDRGSQYTSEQFQRLLLELGVTCSMSRAGNVWDNSAMESFFSSLKT 238 Query: 237 ERIKRRIYADRNEARSDVFDYIEMFYNPKRRHSYSGNVSPVQFEQQ 282 ER+ R+++ R++ R++VFDYIE FYNP RRHS G +SP+ FEQQ Sbjct: 239 ERLSRKMFRTRDDIRAEVFDYIERFYNPVRRHSTLGYISPIDFEQQ 284 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 573,982 Number of extensions: 22939 Number of successful extensions: 64 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 57 Number of HSP's successfully gapped: 10 Length of query: 290 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 209 Effective length of database: 733,452 Effective search space: 153291468 Effective search space used: 153291468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)