BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3213.p
         (314 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096571|ref|YP_001101646.1| LysR family transcriptional reg...    97   1e-21

>gi|134096571|ref|YP_001101646.1| LysR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 319

 Score = 96.7 bits (239), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 30/312 (9%)

Query: 8   LDIHLIRILYLLLCEKNVSRVALKLNQPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67
           LD++L+R+   ++ E+N++R A  L   QP++S +LR+LR+  GD L++R A G+ PT  
Sbjct: 6   LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDALGDELVIRTAHGVKPTSR 65

Query: 68  GESLLKPAKRILDETERLFVPKTAFVPQEEERTFHLAAPDYMNTPFFTEVIARVRRESPR 127
              L    +R L + E    P T F       TF +A  D     +   ++  + +E+P 
Sbjct: 66  ATELWPVVRRALSDLETAVTPDT-FDVSRATTTFRMAMADATAALWLPFLVRAIEKEAPG 124

Query: 128 SRIVIHALGPDTDYVRR--LSDGDLDLVIANWDAPPAHLHLS-----------KLFDDPI 174
             +    + P T    R  L  GD+DL I  +    A L              +L+    
Sbjct: 125 LNV---RMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGEY 181

Query: 175 VCLMRADCAYAKRTAREAMRMEDYLDLPHAAPSQILPGYHGS----IDSFLEKQNLRRNV 230
           VC+MR +   AK    E + ++ Y      A   +L  + G     +D  L +    R +
Sbjct: 182 VCVMRKNHPLAK----EELTLDTY-----CAAHHLLVSFSGRAKGLMDDALSEVGRERRI 232

Query: 231 VVESAHFRMLPYMVAQTDLVLTAGQQFARFYEKLLPLKSYTVPIKFPPLRFYQLWHERVH 290
           ++    F     +VA +DL+    +           L +  +P   P +    LWHER  
Sbjct: 233 LLTVNQFFTAGRVVASSDLITVLPRHLIASTGMEEALIAKDLPFSLPEVHVDMLWHERDA 292

Query: 291 QATEHKWLRAQV 302
           +   HKWLR Q+
Sbjct: 293 RNPAHKWLREQL 304


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 593,008
Number of extensions: 23771
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 232
Effective length of database: 730,157
Effective search space: 169396424
Effective search space used: 169396424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)