BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3210.p (752 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 890 0.0 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 178 7e-46 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 104 2e-23 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/769 (58%), Positives = 565/769 (73%), Gaps = 27/769 (3%) Query: 1 MSYIKSRKHAHGALASTRLSAAVAGALLLPAVAAHAQ-TSATLPKVEVTATQESDYKADK 59 M++IKSRKH +S + A+A ++LP +AQ ++ LP+VEV T ES YKAD Sbjct: 1 MAHIKSRKHPAARRSSCSTAVAMA-FVVLPGTTVYAQQVTSVLPEVEVHGTTES-YKADT 58 Query: 60 ASSAKYSQPLVDTPQTLTVIKKQLIDQQGATTLTEALRNSPGVGTFYLGENGSTSTGDAI 119 SS K++QPL++T QT+TVIKK+L+ QQG TLTEALRN+PGVGTF LGENG+T+TGDAI Sbjct: 59 VSSPKFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAI 118 Query: 120 YMRGFDSSSAIFVDNVRDLGSVSRDMFNIQQVEVLKGPAGTDNGRGSPTGSINLVTKQAE 179 YMRGFD+SS+IFVD VRDLGS+SRD+FNI+Q+EV KGPAG D GRGSPTGSINL TKQ Sbjct: 119 YMRGFDTSSSIFVDGVRDLGSISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPT 178 Query: 180 MSNFFNASATYGSWNQKRATADWNKTLDEERGIAMRLNLMKQDSGVPGRHEVKNDRWGIA 239 M ++ S + GS + KR TAD NK LD + G A R+NL+K DSGV GR VKNDR GIA Sbjct: 179 MKEAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIA 238 Query: 240 PSLAFGLNSPTRVFLNYLHADQDNVPDGGVPTIGLPGYSSP--------------DPARP 285 + AFGL + TR +LNYLH DQ N+PDGGVPTIGLPGYSSP PARP Sbjct: 239 AAFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARP 298 Query: 286 YISGAPRVASSNFYGNVNDYDKVTADMFTARVEHDFSQDVKLQNTTRYAKTSQDYFLTSF 345 +++GA RV SSNFYG V D+D VTADM TARVEHD S DVKLQNTTR+ KTSQ+Y LT F Sbjct: 299 FLNGASRVNSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGF 358 Query: 346 MASAASSSRPTGLVTPSASNLSSWMLARNLPTRKDQSNEILTNQTNVTANLKTGGLQHTL 405 M SA + L+TP+ ++ ++W LAR+ KDQ+NEI +NQTN+TA TG ++H+L Sbjct: 359 MGSAPN------LLTPNPADPTTWTLARS-SQMKDQTNEIFSNQTNLTAKFDTGAVKHSL 411 Query: 406 VGGVEFTQEKQHATSFTATGTLPAANLYNPNPNFGNGSYSIRATGYN-DGKTDTVSAYLF 464 V GVE + EKQ + + GT+ AANLYNPNP Y+ G N +G+T+T+S YLF Sbjct: 412 VTGVELSSEKQRSLGYAGLGTISAANLYNPNPYLVRTGYNPVGNGTNSEGRTNTLSVYLF 471 Query: 465 DTLKFNEQWSINGGIREDHYRTTYNANAAGAL-TNLSTSGNLFNWKLAAIFKPTDYSSIY 523 DTL+ + QW INGG+R DHY T Y ++ L+ SG L NWKL ++KPT+ SS+Y Sbjct: 472 DTLELSPQWQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLY 531 Query: 524 ALYATSQQPPGGANFTLSASANSAANTNYAPQKTKTSELGTKWDLLNKKLAVTAAVFHTE 583 YATS+QPPGG+NF LS++ANSAAN NY PQ+T+T+E+G KWDLL+K+L +T A++ T+ Sbjct: 532 VSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTD 591 Query: 584 VTNEVEQDPTSLQYFQTGKKTVQGIELGVTGDVTSNLSLTAGYTWMDTKVDNGAITTASG 643 V NE+E + T + QTGKK V+G+ELGV G++TS ++AGYT M T V GAI G Sbjct: 592 VKNEIEGNATD-GFTQTGKKRVEGVELGVVGEITSAWQVSAGYTRMRTDVTAGAIVNQDG 650 Query: 644 ENNLAYTPKQAFTSWATYRLPQGFTVGGGARYVSSLLRGKDGAVGTPTFADAYWVFDGMV 703 + L+YTPKQAFT+W TY+LP GFT+GGGAR+V +L + KDGAVGTP F ++YWV+D M Sbjct: 651 TSGLSYTPKQAFTAWTTYKLPGGFTIGGGARFVDALHKPKDGAVGTPQFVESYWVYDAMA 710 Query: 704 GYVVNKNVDLQLNVYNIFNKDYVAAINKSGYRYTPGTPRAVALTANFKF 752 Y V+KNV LQLN+YN+ +KDYVA+INKSGYRYTPG R+ L+AN KF Sbjct: 711 SYEVSKNVSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLSANIKF 759 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 178 bits (452), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 201/752 (26%), Positives = 334/752 (44%), Gaps = 86/752 (11%) Query: 25 GALLLPAVAAHAQTSA----TLPKVEVTATQES------DYKADKASSA-KYSQPLVDTP 73 G+ L + A+ ++SA TLP V V+ QE+ Y+A ++S+A K L +T Sbjct: 36 GSSLQASPASQNESSAPAVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETL 95 Query: 74 QTLTVIKKQLIDQQGATTLTEALRNSPGVGTFYLGENGSTSTGDAIYMRGFDSSSAIFVD 133 Q +TV+ + I QGAT L +AL + GV + G + T D++ +RG +S +++D Sbjct: 96 QAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRT---DSVLVRG--ASPDVYID 150 Query: 134 NVRDLG----SVSR-DMFNIQQVEVLKGPAGTDNGRGSPTGSINLVTKQAEMSNFFNASA 188 +R S +R D F ++++EVL+GPA G+GS G +NLV+K+ + Sbjct: 151 GLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGV 210 Query: 189 TYGSWNQKRATADWNKTLDEERGIAMRLNLMKQDSGVPGRHEVKNDRWGIAPSLAFGLNS 248 G++ +K+ AD L E++ RL + +++ + VK+DR IAPSL + N Sbjct: 211 QLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDY-VKDDRTLIAPSLTWKPNG 269 Query: 249 PTRVFLNYLHA-DQDNVPDGGVPTIGLPGYSSPDPARPYISGAPRVASSNFYGNVNDYDK 307 T + L L+ D+ +P G+ P ++G + +S F G D Sbjct: 270 VTSLTLQGLYQRDRTGSTSQFLPWAGM--------LTPNVNGM--IPTSRFIGEPGDRYD 319 Query: 308 VTADMFTARVEHDFSQDVKLQNTTRYAKTSQDYFLTSFMASAASSSRPTGLVTPSASNLS 367 EH + + + RYA DYF + A + S+ TGL A + Sbjct: 320 TDRQSLGYLFEHQLNDNWTFRQNFRYAVNEVDYF--THYADSFSTDPSTGLPGGWAIDPV 377 Query: 368 SWMLARNLPTRKDQSNEILTNQTNVTANLKTGGLQHTLVGGVEFTQEKQHATSFTATGTL 427 + L +I T ++ A L+TG LQH L+ G+++T+ ++ S T+ Sbjct: 378 NQRLIGRYADDSITKVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDRQSGFGMDTI 437 Query: 428 PAANLYNPNPNFGNGSYSIRATGYNDGKT--DTVSAYLFDTLKFNEQWSINGGIREDHYR 485 ++Y P +GNG + AT +D ++ + YL D +K + W ++ G+R D Sbjct: 438 ---DVY--APVYGNG---VVATLADDPQSVQRQIGLYLQDQIKIGKNWIVSAGLRHDR-- 487 Query: 486 TTYNANAAGALTNLSTSGNLFNWKLAAIFKPTDYSSIYALYATSQQPPGGANFTLSASAN 545 N AG+ S + ++ ++ + S Y Y+ S P G N Sbjct: 488 --VNNALAGSEDEESRATTK---RVGVMYLLENGWSPYVSYSESFTPVAGTN-------- 534 Query: 546 SAANTNYAPQKTKTSELGTKWDLLNKKLAVTAAVFHTEVTNEVEQDPTS-LQYFQTGKKT 604 A + + P + + E G K+ +N TAA++ + N+ DP++ L Q G+ Sbjct: 535 -AYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDPSNPLNQIQVGQTK 593 Query: 605 VQGIELGVTGDVTSNLSLTAGYTWMDTKVDNGAITTASGENNLAYTPKQAFTSWATYRLP 664 +G+EL +T + + A Y + D + L P+ +W +R Sbjct: 594 NRGVELEWKASITPTIDVLAHYNYTDL------------DEQLDEVPRHQAAAWGKWRFS 641 Query: 665 ----QGFTVGGGARYVSSLLRGKDGAVGTPTFADAYWVFDGMVGYVVNKNVDLQLNVYNI 720 GF +G GARY+SS G + T DA +D M N LNV N+ Sbjct: 642 IGGVSGFALGAGARYMSSFRDGVAPTTPSVTLLDALLSWDTM-------NWRYALNVNNL 694 Query: 721 FNKDYVAAINKSGYRYTPGTPRAVALTANFKF 752 +K Y A G + G R+ LTA +KF Sbjct: 695 TDKVYNATCLSRGDCWY-GARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 104 bits (259), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 168/734 (22%), Positives = 283/734 (38%), Gaps = 72/734 (9%) Query: 41 TLPKVEVTATQESDYKADKASSAKYSQ-PLVDTPQTLTVIKKQLIDQQGATTLTEALRNS 99 LP+V V + ESD A AS +S PL +TP +++VI + + + + T+A++ Sbjct: 33 VLPEVVVMSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVKYD 92 Query: 100 PGVGTFYLGENGSTSTGDAIYMRGF--DSSSAIFVDNVRDLGSVSRDMFNIQQVEVLKGP 157 V Y + D +RGF D S D + L M N ++ EVLKG Sbjct: 93 ASVQNAY----NAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPMENKERFEVLKGL 148 Query: 158 AGTDNGRGSPTGSINLVTKQAEMSNFFNASATYGSWNQKRATADWNKTLDEERGIAMRLN 217 AG G S G +N V K+ + + D D++R R+N Sbjct: 149 AGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGRSDDKR-FGYRIN 207 Query: 218 LMKQD-----SGVPGRHEVKND--RWGIAPSLAFGLNSPTRVFLNYLHADQDNVPDGGVP 270 D G G + + W ++P ++ L+Y H Q Sbjct: 208 AAGADIKSYVQGSNGERQFVSGAFDWRLSPKALLQID------LDYHHKSQ--------- 252 Query: 271 TIGLPGYSSPDPARPYISGAPRVASSNFYGNVNDYDKVTADMFTARVEHDFSQDVKLQNT 330 + +PG+ PA+ +G V++ N + VT D ++ ++ + + T Sbjct: 253 -LSVPGFQLLGPAQRIPTG---VSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTT 308 Query: 331 TRYAKTSQDYFLTSFMASAASSSRPTGLVTPSASNLSSWMLARNLPTRKDQSNE-ILTNQ 389 + K + L A A +S ++P ++ + R+D +++ Q Sbjct: 309 LQANK----FELRRDDAVALASGCVAEGLSPGYCADGTFNM---YDLRRDNDKRTVMSTQ 361 Query: 390 TNVTANLKTGGLQHTLVGGVEFTQEKQHATSF----TATGTLPAANLYNPNPNFGNGSYS 445 + G ++H L G+ + + +F TG++ YNP S Sbjct: 362 AMLQGKFNAGTIKHDLTLGMSTMNRRDNYANFLFESAGTGSIYYPK-YNPLTLGPTNPVS 420 Query: 446 IRATGYNDGKTDTVSAYLFDTLKFNEQWSINGGIREDHYRTTYNANAAGALTNLSTSGNL 505 +R K + S ++ D L N+++ ++ G+R + T ++ G + T + Sbjct: 421 LRR------KDEERSVFVQDVLTLNDKFKLHAGMRYTQLQRTQFTSSGGLFRH--TDKDF 472 Query: 506 FNWKLAAIFKPTDYSSIYALYATSQQPPGGANFTLSASANSAANTNYAPQKTKTSELGTK 565 +A +F P SIY Y+ +P GA S T P K++ E+G K Sbjct: 473 LLPNVALVFSPQSNWSIYGTYSQGLEP--GAEV---PSGLVNEETVLDPNKSRQVEIGIK 527 Query: 566 WDLLNKKLAVTAAVFHTEVTNEVEQDPTSLQYFQTGKKTVQGIELGVTGDVTSNLSLTAG 625 DL ++ ++V AA+F N + L Y GK+ +G+EL G T NL+L A Sbjct: 528 ADL-SQDISVAAALFQIHRDNNYT---SGLNYVTAGKEVHRGLELSAQGRATRNLTLGAS 583 Query: 626 YTWMDTKVDNGAITTASGENNLAYTPKQAFTSWATYRLPQ--GFTVGGGARYVSSLLRGK 683 T + +N G+ + P + Y LPQ + Y SS + Sbjct: 584 MTTLQAFAENTGDARVEGK-RIGNVPVLKSAVFMDYTLPQMPALKLNAMWIYSSSKVFAP 642 Query: 684 DGAVGTPT-FADAYWVFDGMVGY---VVNKNVDLQLNVYNIFNKDYVA-AINKSGYRYTP 738 + + D Y V + Y V + + N+F+K Y A N G P Sbjct: 643 NAQISELNKKVDGYHVLNVGAQYKTKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIP 702 Query: 739 GTPRAVALTANFKF 752 G PR L+A F F Sbjct: 703 GAPRVFRLSAQFDF 716 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.128 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,371,043 Number of extensions: 56458 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 5 Length of query: 752 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 663 Effective length of database: 707,092 Effective search space: 468801996 Effective search space used: 468801996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)