BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3209.p (749 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 775 0.0 gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 144 2e-35 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 87 3e-18 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/769 (50%), Positives = 539/769 (70%), Gaps = 30/769 (3%) Query: 1 MSCIKSRKHSSSR---LSAAVAGA-LLLPAMAAHAQSTSPSLPGVQVDATKDSPYKAEQS 56 M+ IKSRKH ++R S AVA A ++LP +AQ + LP V+V T +S YKA+ Sbjct: 1 MAHIKSRKHPAARRSSCSTAVAMAFVVLPGTTVYAQQVTSVLPEVEVHGTTES-YKADTV 59 Query: 57 ASPKYTQPLVDTPQTLQVFKRPLMEQQGATTLSEVLRNTPGVGTFFLGENGSTSTGDTVY 116 +SPK+TQPL++T QT+ V K+ L++QQG TL+E LRNTPGVGTF LGENG+T+TGD +Y Sbjct: 60 SSPKFTQPLLNTTQTITVIKKELVQQQGGATLTEALRNTPGVGTFSLGENGNTNTGDAIY 119 Query: 117 MRGFDVSSAIFVDNVRDLGAISRDVFNLQQVEVLKGAAGTDNGRGSPTGSINLVTKQPEL 176 MRGFD SS+IFVD VRDLG+ISRD+FN++Q+EV KG AG D GRGSPTGSINL TKQP + Sbjct: 120 MRGFDTSSSIFVDGVRDLGSISRDIFNIEQIEVTKGPAGADTGRGSPTGSINLSTKQPTM 179 Query: 177 SNSVTASATYGSFNQKRGTVDWNQVIDSERGLALRLNLMKQNSGVPGRHEVHSSRDGIAP 236 + + S + GS + KR T D N+ +D + G A R+NL+K +SGV GR V + R GIA Sbjct: 180 KEAYSGSVSVGSGDYKRITADLNKPLDFDGGAAFRINLLKDDSGVAGRDIVKNDRQGIAA 239 Query: 237 SLAWGLNSPTRIILNYLHMQQDNRPDGGVVTIGLPGYSSP--------------DPARPF 282 + A+GL + TR LNYLH+ Q N PDGGV TIGLPGYSSP PARPF Sbjct: 240 AFAFGLKTNTRTYLNYLHVDQSNIPDGGVPTIGLPGYSSPVQAANPAATPPVVAIPARPF 299 Query: 283 IGQAPKVNPRNFYGHIDDYNKVNADMTTLRVEHDFSPTLKLQNSTRYARTDQDYRLSSFL 342 + A +VN NFYG + D++ V ADM T RVEHD SP +KLQN+TR+ +T Q+Y L+ F+ Sbjct: 300 LNGASRVNSSNFYGTVGDFDDVTADMLTARVEHDISPDVKLQNTTRFGKTSQNYLLTGFM 359 Query: 343 ATGVASSRFPAGILTPSVSDRSTWQLARQLVTLRDQSNEILSNQTHLTSSFTTGDIKHTL 402 + +LTP+ +D +TW LAR ++DQ+NEI SNQT+LT+ F TG +KH+L Sbjct: 360 GSA-------PNLLTPNPADPTTWTLARS-SQMKDQTNEIFSNQTNLTAKFDTGAVKHSL 411 Query: 403 VGGLELTRERQRALSFTATGLRPYANLYQPDAHFDESKVKVGATGFN-EGQTDTVSLYAL 461 V G+EL+ E+QR+L + G ANLY P+ + + G N EG+T+T+S+Y Sbjct: 412 VTGVELSSEKQRSLGYAGLGTISAANLYNPNPYLVRTGYNPVGNGTNSEGRTNTLSVYLF 471 Query: 462 HTIKFTPRWSINLGLREDHYRTSFDSTSPS-NTSNLKTSGNLLNWKLAGVFKPTSASSVY 520 T++ +P+W IN G+R DHY T ++S++ + + L SG LLNWKL G++KPT SS+Y Sbjct: 472 DTLELSPQWQINGGVRVDHYDTKYESSTLNVRNATLNKSGTLLNWKLGGLYKPTEDSSLY 531 Query: 521 ALYASSQQPPGGANFSLSASRSSASNPDYAPQKTRTAELGTKWEVLDRKLALTAALFRTE 580 YA+S+QPPGG+NF+LS++ +SA+N +Y PQ+TRTAE+G KW++LD++L LT A++RT+ Sbjct: 532 VSYATSKQPPGGSNFALSSNANSAANVNYDPQETRTAEIGAKWDLLDKRLGLTTAIYRTD 591 Query: 581 VSNEVELDEVANTYFQTGRKTTSGLELGVVGEVTRDISLTAGFSRMDSRVTRGRVVTAGG 640 V NE+E + + QTG+K G+ELGVVGE+T ++AG++RM + VT G +V G Sbjct: 592 VKNEIE-GNATDGFTQTGKKRVEGVELGVVGEITSAWQVSAGYTRMRTDVTAGAIVNQDG 650 Query: 641 ENYLAYAPRQSFTSWATWRAAPGLSLGGGLRYSSGLLRGRDGAVGTPTSTGAYWVADVMA 700 + L+Y P+Q+FT+W T++ G ++GGG R+ L + +DGAVGTP +YWV D MA Sbjct: 651 TSGLSYTPKQAFTAWTTYKLPGGFTIGGGARFVDALHKPKDGAVGTPQFVESYWVYDAMA 710 Query: 701 AYVINQHVDLQFNVTNLFNKDYVAAINKSGYRYTPGGERAFALTANLKF 749 +Y ++++V LQ N+ NL +KDYVA+INKSGYRYTPG ER+ L+AN+KF Sbjct: 711 SYEVSKNVSLQLNLYNLADKDYVASINKSGYRYTPGIERSARLSANIKF 759 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 144 bits (363), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 196/763 (25%), Positives = 312/763 (40%), Gaps = 106/763 (13%) Query: 20 GALLLPAMAAHAQSTSPS---LPGVQVDATKDSP------YKAEQSASPKYTQ-PLVDTP 69 G+ L + A+ +S++P+ LP V V +++ Y+A +S++ T L +T Sbjct: 36 GSSLQASPASQNESSAPAVTTLPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETL 95 Query: 70 QTLQVFKRPLMEQQGATTLSEVLRNTPGVGTFFLGENGSTSTGDTVYMRGFDVSSAIFVD 129 Q + V R + QGAT L + L GV + G + T D+V +RG S +++D Sbjct: 96 QAVTVVTRDQIVDQGATNLQDALTYAAGVRSDAYGLDSRT---DSVLVRG--ASPDVYID 150 Query: 130 NVRDLG-----AISRDVFNLQQVEVLKGAAGTDNGRGSPTGSINLVTKQPELSNSVTASA 184 +R A D F L+++EVL+G A G+GS G +NLV+K+P+ Sbjct: 151 GLRQANDYYTSAARPDPFTLERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGV 210 Query: 185 TYGSFNQKRGTVDWNQVIDSERGLALRLNLMKQNSGVPGRHEVHSSRDGIAPSLAWGLNS 244 G+F +K+ D + ++ RL + +N+ + V R IAPSL W N Sbjct: 211 QLGNFGRKQLQADVTGPLTEDKQWLYRLVAVARNADTQVDY-VKDDRTLIAPSLTWKPNG 269 Query: 245 PTRIILNYLHMQQDNR-------PDGGVVTIGLPGYSSPDPARPFIGQAPKVNPRNFYGH 297 T + L L+ Q+D P G++T P + P FIG+ Sbjct: 270 VTSLTLQGLY-QRDRTGSTSQFLPWAGMLT---PNVNGMIPTSRFIGEPG---------- 315 Query: 298 IDDYNKVNADMTTLRVEHDFSPTLKLQNSTRYARTDQDY--RLSSFLATGVASSRFPAGI 355 D Y+ + L EH + + + RYA + DY + +T S+ P G Sbjct: 316 -DRYDTDRQSLGYL-FEHQLNDNWTFRQNFRYAVNEVDYFTHYADSFSTD-PSTGLPGGW 372 Query: 356 LTPSVSDRSTWQLARQLVTLRDQSNEILSNQTHLTSSFTTGDIKHTLVGGLELTR-ERQR 414 V+ R + A +T +I + HL + TG ++H L+ GL+ TR +R R Sbjct: 373 AIDPVNQRLIGRYADDSIT----KVKIATIDQHLQAKLQTGPLQHDLLAGLDYTRYQRDR 428 Query: 415 ALSFTATGLRPYANLYQPDAHFDESKVKVGATGFNEGQT--DTVSLYALHTIKFTPRWSI 472 F + YA +Y V AT ++ Q+ + LY IK W + Sbjct: 429 QSGFGMDTIDVYAPVYGN---------GVVATLADDPQSVQRQIGLYLQDQIKIGKNWIV 479 Query: 473 NLGLREDHYRTSFDSTSPSNTSNLKTSGNLLNWKLAGVFKPTSASSVYALYASSQQPPGG 532 + GLR D + + S S T + + L + P Y Y+ S P G Sbjct: 480 SAGLRHDRVNNAL-AGSEDEESRATTKRVGVMYLLENGWSP------YVSYSESFTPVAG 532 Query: 533 ANFSLSASRSSASNPDYAPQKTRTAELGTKWEVLDRKLALTAALFRTEVSNEVELDEVAN 592 N A + + P + E G K+ ++ TAA+++ + N+ D +N Sbjct: 533 TN---------AYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEKNKSTTDP-SN 582 Query: 593 --TYFQTGRKTTSGLELGVVGEVTRDISLTAGFSRMDSRVTRGRVVTAGGENYLAYAPRQ 650 Q G+ G+EL +T I + A ++ D + L PR Sbjct: 583 PLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNYTDL------------DEQLDEVPRH 630 Query: 651 SFTSWATWR----AAPGLSLGGGLRYSSGLLRGRDGAVGTPTSTGAYWVADVMAAYVINQ 706 +W WR G +LG G RY S RDG PT+ + +++ +N Sbjct: 631 QAAAWGKWRFSIGGVSGFALGAGARYMSSF---RDGVA--PTTPSVTLLDALLSWDTMNW 685 Query: 707 HVDLQFNVTNLFNKDYVAAINKSGYRYTPGGERAFALTANLKF 749 L NV NL +K Y A G + G R+ LTA KF Sbjct: 686 RYAL--NVNNLTDKVYNATCLSRGDCWY-GARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 87.0 bits (214), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 185/761 (24%), Positives = 294/761 (38%), Gaps = 115/761 (15%) Query: 32 QSTSPSLPGVQVDATKDSPYKAEQSASPKYTQ-PLVDTPQTLQVFKRPLMEQQGATTLSE 90 +++ LP V V + +S A ++ ++ PL +TP ++ V M+ + + ++ Sbjct: 28 ETSENVLPEVVVMSDSESDGIARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATD 87 Query: 91 VLRNTPGVGTFFLGENGSTSTG--DTVYMRGF--DVSSAIFVDNVRDLGAISRDVFNLQQ 146 ++ V +N + G D +RGF D+ S D + L + N ++ Sbjct: 88 AVKYDASV------QNAYNAVGLADWFSIRGFTLDMGSNYRKDGMVVLAHSMIPMENKER 141 Query: 147 VEVLKGAAGTDNGRGSPTGSINLVTKQP--ELSNSVTASATYGSFNQKRGT----VDWNQ 200 EVLKG AG G S G +N V K+P E SVT A+ +RGT VD Sbjct: 142 FEVLKGLAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEAS------ERGTLYGAVDLGG 195 Query: 201 VIDSERGLALRLNLMKQNSGVPGRHEVHSS---RDGIAPSLAWGLNSPT---RIILNYLH 254 D +R R+N +G + V S R ++ + W L SP +I L+Y H Sbjct: 196 RSDDKR-FGYRINA----AGADIKSYVQGSNGERQFVSGAFDWRL-SPKALLQIDLDYHH 249 Query: 255 MQQDNRPDGGVVTIGLPGYSSPDPARPF-IGQAPKVNPRNFYGHI---DDYNKVNADMTT 310 Q + +PG+ PA+ G + K N + DD N + Sbjct: 250 KSQ----------LSVPGFQLLGPAQRIPTGVSAKTMLNNQSWSLPVTDDTNNLG----- 294 Query: 311 LRVEHDFSPTLK--LQNSTRYARTDQDYRLSSFLATGVASSRFPAGILTPSVSDRSTWQL 368 ++ E++ + LQ + R D A +AS G L+P T+ Sbjct: 295 IKFEYELNEQWHTTLQANKFELRRDD--------AVALASGCVAEG-LSPGYCADGTF-- 343 Query: 369 ARQLVTLRDQSNE--ILSNQTHLTSSFTTGDIKHTLVGGLELTRERQRALSF----TATG 422 + LR +++ ++S Q L F G IKH L G+ R +F TG Sbjct: 344 --NMYDLRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGMSTMNRRDNYANFLFESAGTG 401 Query: 423 LRPYANLYQPDAHFDESKVKVGATGFNEGQTDTVSLYALHTIKFTPRWSINLGLREDHY- 481 Y Y P + V + + + S++ + ++ ++ G+R Sbjct: 402 SIYYPK-YNPLTLGPTNPVSL------RRKDEERSVFVQDVLTLNDKFKLHAGMRYTQLQ 454 Query: 482 RTSFDSTSPSNTSNLKTSGNLLNWKLAGVFKPTSASSVYALYASSQQPPGGANFSLSASR 541 RT F S S T + L +A VF P S S+Y Y+ +P L Sbjct: 455 RTQFTS---SGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQGLEPGAEVPSGLVNEE 511 Query: 542 SSASNPDYAPQKTRTAELGTKWEVLDRKLALTAALFRTEVSNEVELDEVANTYFQTGRKT 601 + P K+R E+G K + L + +++ AALF+ N Y G++ Sbjct: 512 TVLD-----PNKSRQVEIGIKAD-LSQDISVAAALFQIHRDNNY---TSGLNYVTAGKEV 562 Query: 602 TSGLELGVVGEVTRDISLTAGFSRM--------DSRVTRGRVVTAGGENYLAYAPRQSFT 653 GLEL G TR+++L A + + D+RV R+ G L A + Sbjct: 563 HRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRI---GNVPVLKSAVFMDY- 618 Query: 654 SWATWRAAPGLSLGGGLRYSSGLLRGRDGAVGT-PTSTGAYWVADVMAAY---VINQHVD 709 T P L L YSS + + + Y V +V A Y V Sbjct: 619 ---TLPQMPALKLNAMWIYSSSKVFAPNAQISELNKKVDGYHVLNVGAQYKTKVSGTKTT 675 Query: 710 LQFNVTNLFNKDYVA-AINKSGYRYTPGGERAFALTANLKF 749 +F + N+F+K Y A N G PG R F L+A F Sbjct: 676 FRFGIDNVFDKFYWGDASNAYGGYLIPGAPRVFRLSAQFDF 716 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.129 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,389,934 Number of extensions: 56719 Number of successful extensions: 136 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 3 Length of query: 749 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 660 Effective length of database: 707,092 Effective search space: 466680720 Effective search space used: 466680720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)