BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3208.p
         (117 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093854|ref|YP_001098929.1| putative transthyretin-like pro...    87   3e-19

>gi|134093854|ref|YP_001098929.1| putative transthyretin-like
           protein [Herminiimonas arsenicoxydans]
          Length = 136

 Score = 86.7 bits (213), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 4/114 (3%)

Query: 4   LSTHVLDITKGKPGAGVKLALYAVEQGGKRLLKQAVTNDDGRCDEPLLAGDTLQVGKYEL 63
           LS H+LD+  G+P  G+ + L   E      L  AVTN+ GR      A  +L  G Y +
Sbjct: 27  LSVHILDLQTGQPMTGITVTLEKSEGNIWHQLNSAVTNEQGRIAALFPAEQSLVKGNYRV 86

Query: 64  VFAAGDYFAAQGVSLPQPRFVDEVVIAFGIADATQNYHVPLVVSPWAYSTYRGS 117
           VF  G+ +A    SL QP F  E+ + F +    ++YH+PL++SP+ +STYRG+
Sbjct: 87  VFKTGERYA----SLKQPTFFPEIPVQFHVDKTNEHYHIPLLLSPFGFSTYRGN 136


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 241,935
Number of extensions: 9574
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 1,000,347
Length adjustment: 70
Effective length of query: 47
Effective length of database: 769,697
Effective search space: 36175759
Effective search space used: 36175759
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)