BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3207.p
         (186 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095369|ref|YP_001100444.1| putative transferase [Herminiim...    80   5e-17

>gi|134095369|ref|YP_001100444.1| putative transferase
           [Herminiimonas arsenicoxydans]
          Length = 174

 Score = 80.5 bits (197), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 14/155 (9%)

Query: 9   HRPQVHESAYVDHTAILCGKVIVHENVFIGPYAVIRADEVNEHGEMEAIVIGAHSNIQDG 68
           H P +  SAY+  +A + G+V +  N  +     +R D        E I IG + N+Q+G
Sbjct: 9   HAPDIDASAYITDSATIIGRVTIKANSSVWFQVTVRGDN-------EDITIGENCNLQEG 61

Query: 69  VVIHSKSGAAVTIGERSSIAHRAIVHGPCTVGDGAFIGFNSVLFN-CSIGAGCVVRHNAV 127
            V+H+  G  +T+G+  S+ H+A+VHG CTVG G+ IG  +++ N   IG  C+V   A+
Sbjct: 62  AVLHADPGFPLTLGDNVSVGHQAMVHG-CTVGAGSLIGIQAIILNGAKIGRNCLVGAGAL 120

Query: 128 V-DGCDLPPGFYV---PSTE-RIGPKTDLATIPRV 157
           V +G + P    +   P+   R   + D+A + R+
Sbjct: 121 VTEGKEFPDNSLIIGAPAKAIRTLNENDVANLQRI 155


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 361,359
Number of extensions: 14443
Number of successful extensions: 41
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 1
Length of query: 186
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 110
Effective length of database: 749,927
Effective search space: 82491970
Effective search space used: 82491970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)