BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3206.p (756 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093348|ref|YP_001098423.1| putative TonB-dependent recepto... 612 e-176 gi|134096458|ref|YP_001101533.1| putative exogenous ferric sider... 59 7e-10 >gi|134093348|ref|YP_001098423.1| putative TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 763 Score = 612 bits (1577), Expect = e-176, Method: Compositional matrix adjust. Identities = 338/771 (43%), Positives = 461/771 (59%), Gaps = 46/771 (5%) Query: 17 PLLLAILCAWSSSALAQQA----ATDLPTIEVRGSGSVAERDQLPQTSASVTADTANDSI 72 P+ A+L A+S+ A AQ+A L TI V + Q+P T S+T ++I Sbjct: 7 PIYAAVLAAFSTCAYAQEATDTVVKTLGTITVTSGQPTSLPTQIPTTIESITGKQIAETI 66 Query: 73 NVTDSSDALKYLPSLTVRKRYIGD-TQAPLATRTTGVNASARSLVYADGILLSALVNNNN 131 N TD+ DALKY PSL VRKRYIGD A LA+R +G SARS+VYADGILLS L+ N Sbjct: 67 NATDAEDALKYFPSLLVRKRYIGDYDHAVLASRASGTGNSARSMVYADGILLSNLLGNG- 125 Query: 132 GNGSPRWFMVAPEEIERIDVMYGPFAAEYPGNSYGAVTEITTRMPQHFEASIKAQYAQQD 191 + +PRW MV PEEI+R+DV+YGPF+A YPGNS GAV + TRMP FE K Q+ Sbjct: 126 ASFTPRWGMVTPEEIDRVDVLYGPFSAAYPGNSAGAVVDYVTRMPDKFEGHAKVSGFTQN 185 Query: 192 FSHYGASGTYRAQEYNVGLGNRSGALAWRFSVNHLDSYTQPVTYIT----AASNPAG--- 244 + YG T+ + +V LG+R+GA +W + +HLDS QP+ ++ +S P G Sbjct: 186 YDLYGTHSTFSGHQESVSLGDRNGAWSWWINASHLDSDGQPIVIVSKTPCGSSCPVGAPT 245 Query: 245 -TTGAVQTQDRTGKNLYVLGAGNLTHTVQDTARLKFSYDFTPSLTATYTLGFWQNQANAN 303 TGAV +D +LG T T QD ++K +YDF+P+L A+Y LG+WQN + Sbjct: 246 PVTGAVTGKDTKNNPTQILGTTGQTATTQDQGKIKLAYDFSPTLRASYLLGWWQNNTDRM 305 Query: 304 PQSFLRNAAGATVYT--------------SGFSSNQVDQQQWMQSLALRSKTGGPWDWQV 349 P+++LR+AAG VY+ + FS+ + DQ+ MQ+L+L+S T G WDW+V Sbjct: 306 PETYLRDAAGNPVYSGNVSIDGSTYNLKPTDFSATRSDQRHVMQALSLKSNTRGTWDWEV 365 Query: 350 QASTLSASRDLTRTSTAAFPAGLGGGAGTIADASGTGWSTLDAKGIWRPQGVN--QVISF 407 AS +DL R S A+P GG GT+ D SGTGW+T KG WRP G ++ F Sbjct: 366 AASLYDYQKDLVRASGTAYPNAAVGGTGTLTDMSGTGWNTFALKGTWRPDGTEGAHIVDF 425 Query: 408 GAHYDRYTLATPTWNTSNWISGGNGTLNADSRGKTETSALWAQDVWHLAPAWKATLGARY 467 G D Y L T T+NTS+WI+ GT ++ G T +L+AQD W +A WK TLG R Sbjct: 426 GYQRDAYQLRTSTFNTSDWIAANAGTRSSSFNGDTNLQSLYAQDTWRIAKNWKTTLGGRL 485 Query: 468 EWWRAFDGSNYSTAGNTGFAVSQPQISHNGLSPKASLAWAVADDWLATLSTGRALRFPTV 527 E W+A +GS N+ V+ + N SPKA++A+ W S GRA+RFPTV Sbjct: 486 EQWQASNGS----LSNSNTTVAFNDRNENYFSPKAAIAYQATPQWALKASLGRAIRFPTV 541 Query: 528 GELYQNV--QVNGVFLQANPNLKPEKVWSTELAIEKQLQQGQGKWRVSLFEERVADALIS 585 ELYQ + + +PNLKPEK W++EL E+ L G G R ++F E DAL S Sbjct: 542 SELYQGSLDPTTNILSKNDPNLKPEKSWTSELTAERDL--GNGLLRATIFHEDTKDALYS 599 Query: 586 QSSTIGSGVASFTQNVDRTRQRGIEAAFERNDLLLRGFSLNGSLTWVDARILENRGYVAT 645 Q + + + V + QNVD R G+E A++ ND+ +RG L+GS+T+ D++ + N A Sbjct: 600 QLN-VATNVTNI-QNVDHMRTTGLEVAYQANDIAIRGLDLSGSVTFADSKTVRNDNNPA- 656 Query: 646 IPGATSVGKRTPYVPEWRATLVASYKPDDRWTYTLAGRYSGRVYATVDNTDINTHTYQGF 705 SVGK P VP+WRA+ +ASY+PDDRWTYT RYSGR Y +DN+D+N Y G Sbjct: 657 -----SVGKWQPRVPKWRASALASYRPDDRWTYTFGARYSGRQYGQLDNSDVNGFAYTGV 711 Query: 706 DGYTVFDARVRYRFDQHWSGAMGVDNLTNRDYFLFHPFPQRTVFAELKYNF 756 + V D RVRYR + W+ ++G+DNL N+ Y+ FHP+PQRTV AELK++ Sbjct: 712 SSFFVTDVRVRYRIAKQWTASLGIDNLNNKKYWNFHPYPQRTVLAELKFDL 762 >gi|134096458|ref|YP_001101533.1| putative exogenous ferric siderophore receptor; Iha adhesin precursor [Herminiimonas arsenicoxydans] Length = 737 Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 77/328 (23%), Positives = 127/328 (38%), Gaps = 58/328 (17%) Query: 436 ADSRGKTETSALWAQDVWHLAPAWKATLGARYEWWRAFDGSNYSTAGNTGFAVSQPQISH 495 A S+ K + ++++A++ W + T+G R++ F G+ Sbjct: 426 ATSKFKYDQTSVFAENEWRMRKDLALTVGVRHDDHSTFGGAT------------------ 467 Query: 496 NGLSPKASLAWAVADDWLATLSTGRALRFPTVGELYQNV-----QVNGVFLQ-ANPNLKP 549 +P+A L W D W + R P + +L+ V Q + Q NPNLKP Sbjct: 468 ---TPRAYLVWNANDYWTVKGGISKGYRTPGLEQLFDGVVGYGRQGDPTRPQWGNPNLKP 524 Query: 550 EKVWSTELAIEKQLQQGQGKWRVSLFEERVADALISQSSTI--GSGVASFTQNVDRTRQR 607 EK STEL +G G + ++F + DA+ SQ+ T G+ AS + NVD R Sbjct: 525 EKSTSTELGFRFDDLKGFG-FNATIFNTDLEDAIGSQTFTDINGNTNASRSINVDSASVR 583 Query: 608 GIEAAFERNDLLLRGFSLNGSLTWVDARILENRGYVATIPGATSVGKRTPYVPEWRATLV 667 G+E + LN + T+ D+ T K P R Sbjct: 584 GVELGTIWQ--FAPAWKLNANYTFTDSE------------QKTGANKGQPLNNTSRHV-- 627 Query: 668 ASYKPDDRWTYT------LAGRYSGRVYATVDNTDINTHTYQG-FDGYTVFDARVRYRFD 720 + W Y+ Y+ + D NT G + Y + + Y+ + Sbjct: 628 --FNTKVNWHYSQNLGLWAQHSYNSERFRDKDVAGTNTKALLGNYKAYHMLNLGADYKVN 685 Query: 721 QHWSGAMGVDNLTNRDYFLFHPFPQRTV 748 + W+ M ++NL ++D F +P TV Sbjct: 686 KSWTINMAINNLLDKD---FAKYPNVTV 710 Score = 58.9 bits (141), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 63/201 (31%), Positives = 96/201 (47%), Gaps = 11/201 (5%) Query: 4 PLPSSCFPRLNRRPLLLAILCAWSSSALAQQAATDLPTIEVRGSGSVAERDQLPQTSASV 63 P S RL R LA+L A + SA AQ AA + E+ S S E+ ++ AS+ Sbjct: 20 PRKESGLARLARLTWPLAVLAATAGSAHAQDAAPEHQLKEIVVSASGFEQ-EIKNAPASI 78 Query: 64 TADTAND--SINVTDSSDALKYLPSLTVRKRYIGDTQAPLATRTTGVNASARSLVYADGI 121 T T + S V ++AL + + V +G T L+ + G+ SA +L+ DG Sbjct: 79 TVITREELQSNRVNSIAEALSNVEGVDVTSS-VGKTGG-LSIQMRGL-GSAYTLILIDGR 135 Query: 122 LLSA---LVNNNNGNGSPRWFMVAPEEIERIDVMYGPFAAEYPGNSYGAVTEITTR-MPQ 177 + +V N G+ S FM P IERI+V+ GP A Y ++ G V I TR + + Sbjct: 136 RQNPAGNVVPNGFGD-SASTFMPPPSAIERIEVIRGPMATLYGSDAIGGVINIITRKVGK 194 Query: 178 HFEASIKAQYAQQDFSHYGAS 198 + ++ A+ + S YG S Sbjct: 195 TWGGTVTAETTMHEHSEYGDS 215 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.316 0.129 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,473,786 Number of extensions: 62320 Number of successful extensions: 169 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 157 Number of HSP's successfully gapped: 4 Length of query: 756 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 667 Effective length of database: 707,092 Effective search space: 471630364 Effective search space used: 471630364 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)