BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3196.p (606 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis pro... 379 e-106 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 373 e-104 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 367 e-103 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 364 e-102 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 363 e-101 >gi|134096415|ref|YP_001101490.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 573 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 228/369 (61%), Positives = 280/369 (75%) Query: 190 MAILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQSSL 249 M +L + A + + L ++I R + +GG+P AA VA RIA GDLT ID + DQ+S+ Sbjct: 194 MVLLVILSAFSGILLGVLITRNLKGQLGGEPNYAAGVAARIAAGDLTVAIDLRSKDQTSM 253 Query: 250 LYAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEEL 309 L+A+R MRDSL S ++ ++S TI +AS +IA GNLDLS RTE+QA +LEETAS+MEE+ Sbjct: 254 LFAMREMRDSLASIVSQVRSGTDTITTASGQIAAGNLDLSSRTEEQASALEETASSMEEI 313 Query: 310 TATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIA 369 T+TVKQNA+N++QA+ LA AS AI+GG+VV QVV TM ITESSRKI DIIGVIDGIA Sbjct: 314 TSTVKQNAENSQQASTLAVHASSTAIRGGAVVSQVVDTMGSITESSRKIVDIIGVIDGIA 373 Query: 370 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGS 429 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK LI DSV KVD+GS Sbjct: 374 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVEKVDAGS 433 Query: 430 KLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVE 489 KLVEQAGTTM E+V ++RV DI+ +I++A +EQSAGI +V +AI QMDE TQQNAALVE Sbjct: 434 KLVEQAGTTMKEIVGGIQRVADIMSDITAAGREQSAGIEQVNQAIAQMDEVTQQNAALVE 493 Query: 490 QAAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAARPTTTAAPSP 549 +AAAA+QSLQDQA L+ +V F++D +Q A A AA +S A A T A Sbjct: 494 EAAAASQSLQDQATHLSEIVSVFKLDNTQIQAAHAGKPAAARSQAKSLANTVRRTMANKA 553 Query: 550 AQRKPVAAH 558 A +K A+ Sbjct: 554 ASQKIAFAN 562 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 373 bits (958), Expect = e-104, Method: Compositional matrix adjust. Identities = 231/378 (61%), Positives = 278/378 (73%), Gaps = 19/378 (5%) Query: 192 ILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQS-SLL 250 +L V+ + L IV+ + R+I A VA +A GDLT I D++ LL Sbjct: 188 MLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLL 247 Query: 251 YAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELT 310 A++ M DSL ++I ++S TIA+AS++IA GNLDLS RTE+QA SLEETAS+MEELT Sbjct: 248 QALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELT 307 Query: 311 ATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAF 370 +TVKQNADNARQANQLA +AS VA +GG+VV +VV TM+GI S+RKI DIIGVIDGIAF Sbjct: 308 STVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAF 367 Query: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSK 430 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIKTLIDDSV KVD+GSK Sbjct: 368 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSK 427 Query: 431 LVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQ 490 LV +AGTTM EVV SV+RVTDI+ EI +ASQEQSAGI +V +AI QMD+ TQQNAALVE+ Sbjct: 428 LVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEE 487 Query: 491 AAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAARPTTTAAPSPA 550 AAAAA+SL +QAA LA V F++DG + +S+ A R A+ +PA Sbjct: 488 AAAAAESLNEQAANLAQAVSIFKLDGV--------------ANSSRVATRLPVAASNAPA 533 Query: 551 QRKPVAAHPAIAAPKAAA 568 R+ AA P APK A Sbjct: 534 TRQ-FAASP---APKKIA 547 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 367 bits (943), Expect = e-103, Method: Compositional matrix adjust. Identities = 214/349 (61%), Positives = 261/349 (74%), Gaps = 7/349 (2%) Query: 192 ILFAVVAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQP-GDQSSLL 250 +L ++ A+ A ++ R I G + + IA GDLT NI+ + + +L+ Sbjct: 197 VLLGLIGVAIYAFFLI------RAITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLM 250 Query: 251 YAVRGMRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELT 310 ++ M+ L T+A ++ + I++A+ EIA GNLDLS RTEQQA SLEETAS+MEELT Sbjct: 251 LGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETASSMEELT 310 Query: 311 ATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAF 370 +TVKQN DNARQANQLA SAS VA++GG+VV VV TM+ I S+RKI DIIGVIDGIAF Sbjct: 311 STVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAF 370 Query: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSK 430 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV KVD+G++ Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTR 430 Query: 431 LVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQ 490 LV +AGTTMTEVV SV+RVTDI+ EI +ASQEQSAGI +V AI QMDE TQQNAALVEQ Sbjct: 431 LVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQ 490 Query: 491 AAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAA 539 AAAAA SL+DQA L+ +V F++ G Q+ P A K+ S+PAA Sbjct: 491 AAAAASSLRDQATNLSTVVSVFKLQGHQSAPQNLVPQARPKALESRPAA 539 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 364 bits (935), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/324 (62%), Positives = 266/324 (82%), Gaps = 2/324 (0%) Query: 197 VAAALVALVIVINRGILRTIGGDPAKAAEVANRIAQGDLTPNIDTQPGDQSSLLYAVRGM 256 VAA L+ ++V R + +GG+P AA++ RIA GDL+ I T+ GD++SLL A++ M Sbjct: 198 VAATLLGFLLV--RSVYAQLGGEPQYAAQIVRRIAGGDLSATIITRKGDRNSLLAAMQDM 255 Query: 257 RDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETASAMEELTATVKQN 316 + +L T+ +I+ ++ TIA+AS +IA GN+DLS RTEQQA SLEETAS+MEELTATVKQN Sbjct: 256 QQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTEQQASSLEETASSMEELTATVKQN 315 Query: 317 ADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGVIDGIAFQTNILA 376 A +A+QANQLA SAS++A+QG +VV QVV TM+ I+ S+ +I DIIGVI+GIAFQTNILA Sbjct: 316 AGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISASAGRIGDIIGVINGIAFQTNILA 375 Query: 377 LNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAKVDSGSKLVEQAG 436 LNAAVEAAR GEQGRGFAVVA+EVRSLAQRSA AAKEIK+LIDDS+ KV +G+ LV+QAG Sbjct: 376 LNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKEIKSLIDDSLEKVGAGATLVDQAG 435 Query: 437 TTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQNAALVEQAAAAAQ 496 +TM E+VAS+ +VTDI+GEI++AS+EQ+AGI +V +AI QMD TQQNAALVE+AAAAA Sbjct: 436 STMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQAIGQMDRVTQQNAALVEEAAAAAG 495 Query: 497 SLQDQAATLAGLVGRFQIDGSQAH 520 SLQ+QA +L +V F+++ +Q+H Sbjct: 496 SLQEQACSLVQVVSVFKLEQAQSH 519 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust. Identities = 227/383 (59%), Positives = 276/383 (72%), Gaps = 18/383 (4%) Query: 189 RMAILFAVVAAALVALVIV--INRGILRTIGGDPAKAAEVANRIAQGDLTPNIDT-QPGD 245 RMA++ V A L+ +I + GI R + +A +VA +A+GDLT D + D Sbjct: 189 RMALIIGAVIAILLGTLIAWRLTVGITRPLH----EALKVAESVAEGDLTARSDMAETQD 244 Query: 246 QSSLLYAVRG-MRDSLLSTIANIKSSATTIASASHEIARGNLDLSGRTEQQAGSLEETAS 304 + LL + G M+ +L+ T+ I+ TIA+AS EIA GNLDLS RTEQQA SLEETAS Sbjct: 245 EPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETAS 304 Query: 305 AMEELTATVKQNADNARQANQLAESASEVAIQGGSVVGQVVQTMEGITESSRKIADIIGV 364 +MEELT+TVKQNADN+RQANQLA +AS VA++GG+VV QVV TM I S++KI DIIGV Sbjct: 305 SMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGV 364 Query: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSVAK 424 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIKTLI DSV K Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEK 424 Query: 425 VDSGSKLVEQAGTTMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQQN 484 VD+GSKLV +AGTTM E+V V+RV DI+ EI++ASQEQS GI +V +A++QMD+ TQQN Sbjct: 425 VDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQN 484 Query: 485 AALVEQAAAAAQSLQDQAATLAGLVGRFQIDGSQAHAVQAAPTAAVKSAASKPAARP--- 541 AALVE+AAAAA+SLQDQA LA V F++ A A AAP +A KP A P Sbjct: 485 AALVEEAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMHKPLAAPVKK 544 Query: 542 -------TTTAAPSPAQRKPVAA 557 T T + A KPVAA Sbjct: 545 SSSSSSLTVTESKKVAAPKPVAA 567 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.312 0.124 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 664,883 Number of extensions: 20609 Number of successful extensions: 144 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 15 Length of query: 606 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 519 Effective length of database: 713,682 Effective search space: 370400958 Effective search space used: 370400958 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)