BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3195.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096504|ref|YP_001101579.1| hypothetical protein HEAR3355 [...   247   5e-67

>gi|134096504|ref|YP_001101579.1| hypothetical protein HEAR3355
           [Herminiimonas arsenicoxydans]
          Length = 256

 Score =  247 bits (630), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 134/253 (52%), Positives = 174/253 (68%), Gaps = 3/253 (1%)

Query: 1   MPLSVLLSALASSLLLPPVSPVLLSLAGCWLRRRAPRTGLALMLLGVALLLVLSTRVAAL 60
           M  S +++A  S++LLPP++ +LL   G WLRRR PR GL L +  + +L VLSTR+ A 
Sbjct: 1   MSASWMINATISAVLLPPLNFILLCALGLWLRRRWPRGGLTLSVAALIMLTVLSTRMGAS 60

Query: 61  WLIQPLQRQYPPLTHPGQIKQAQAIVILGSGRIDAAPEYGGSDEPTPIGMKRLQYGAFLQ 120
             + PL++  PPL    +   AQAIV+LG GRI  APEYGG D P  I ++RL+Y A LQ
Sbjct: 61  LFVHPLEKMNPPLLS-AKAAGAQAIVVLGGGRISNAPEYGGQDIPAAITLQRLRYAAKLQ 119

Query: 121 RQSGLPILVSGGSPDGSPESEAALMARSLQRDFGVPVRWQETHSDTTAQNARDSAALLKA 180
           R++GLP+LVSGG PDG+ ESEAA MAR L  DF VPV+WQE  S+ TA+NA+ S+ +L+A
Sbjct: 120 RETGLPLLVSGGRPDGASESEAAGMARVLLDDFSVPVKWQEEMSNNTAENAQFSSRVLRA 179

Query: 181 EGITRILLVTDSVHMPRAMRAFAQTGLQVQAAPTLLLQPARARVSDYLPGASHLQMSSYA 240
            G+ RILLVTD++HM RA  AF Q GLQV  A TL    AR  + D+LP  + L M+SYA
Sbjct: 180 AGVQRILLVTDAIHMQRAKIAFQQAGLQVVPAATLFTSAARVTLPDFLP--TSLHMASYA 237

Query: 241 LRERIGQWWYRVR 253
           LRE +G  WY +R
Sbjct: 238 LREWLGLAWYCLR 250


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 396,236
Number of extensions: 14188
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)