BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3188.p
         (354 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095620|ref|YP_001100695.1| dihydroorotate dehydrogenase 2 ...   567   e-163

>gi|134095620|ref|YP_001100695.1| dihydroorotate dehydrogenase 2
           [Herminiimonas arsenicoxydans]
          Length = 347

 Score =  567 bits (1461), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 276/347 (79%), Positives = 306/347 (88%), Gaps = 1/347 (0%)

Query: 1   VSDKFLYALARPLLFSLQPETAHHLVLPALRCAAHYSLTDFITKKPAADPRTVMGIRFPN 60
           +S+KFLYALARP LF++ PE AH+L L ALR AA    T  I K PA DPRTVMGI FPN
Sbjct: 1   MSEKFLYALARPFLFAIDPEAAHNLTLHALRRAASLGWTSAIAK-PAHDPRTVMGITFPN 59

Query: 61  PVGMAAGLDKDGAYIDGLAALGFGFIEVGTVTPRAQPGNPLPRMFRLPAANAVINRMGFN 120
           PVG+AAGLDKDGAYIDGLA LGFGFIEVGTVTP AQPGNPLPRMFRLP ANA+INRMGFN
Sbjct: 60  PVGLAAGLDKDGAYIDGLATLGFGFIEVGTVTPHAQPGNPLPRMFRLPQANAIINRMGFN 119

Query: 121 NGGVDAFVANVQSSRFYQERQGVLGLNIGKNADTPIERAAEDYVHCLEKVYPYASYVTVN 180
           NGGVDAFV+NVQ+SRFYQ ++G+LGLNIGKNADTPIERA +DY+ CLEKVYPYASYVTVN
Sbjct: 120 NGGVDAFVSNVQASRFYQNKEGILGLNIGKNADTPIERAVDDYLICLEKVYPYASYVTVN 179

Query: 181 ISSPNTKNLRQLQGASELDALLSQLKSAQRRLADRHGRYVPVALKIAPDMDMEQVKNVAD 240
           ISSPNTKNLRQLQGASELDALL+QLK AQ+RLAD+H RYVP+ALKIAPD+D EQ++ +A 
Sbjct: 180 ISSPNTKNLRQLQGASELDALLAQLKEAQQRLADQHQRYVPIALKIAPDIDTEQIQTIAQ 239

Query: 241 ALLRHQIDGVIATNTTITRDAVQGMPHGEEAGGLSGKPVLELSNQVIRGLKAEVGDALPI 300
           ALLRH++DGVIATNTTI R+AV+ M H EEAGGLSG PV   SN VIR LKAE+GDALPI
Sbjct: 240 ALLRHKMDGVIATNTTINREAVKNMKHAEEAGGLSGAPVFASSNAVIRALKAELGDALPI 299

Query: 301 IGVGGIFSGADARAKIDAGASLVQLYTGLIYQGPALVRECAEALRAP 347
           IGVGGI SG DA+AKI AGASLVQLYTGLIY+GPAL+RECA ALRAP
Sbjct: 300 IGVGGILSGTDAQAKIAAGASLVQLYTGLIYRGPALIRECAAALRAP 346


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 680,121
Number of extensions: 29831
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 271
Effective length of database: 726,862
Effective search space: 196979602
Effective search space used: 196979602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)