BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3187.p
         (242 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095619|ref|YP_001100694.1| arginyl-tRNA-protein transferas...   408   e-115

>gi|134095619|ref|YP_001100694.1| arginyl-tRNA-protein transferase
           [Herminiimonas arsenicoxydans]
          Length = 241

 Score =  408 bits (1048), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/240 (80%), Positives = 215/240 (89%)

Query: 1   MTHLKDLPFSTLQFYATAPYPCSYLDDQQARSQVATPSHLINADVYSELVKTGFRRSGIF 60
           MTH K+LPFSTLQFYATAPYPCSYLDD+QARSQVATP+HLINADVYSELVK GFRRSGIF
Sbjct: 1   MTHPKELPFSTLQFYATAPYPCSYLDDRQARSQVATPAHLINADVYSELVKNGFRRSGIF 60

Query: 61  TYRPYCDGCAACTPVRIRVAEFQRNRSQRRAWERNAGLQTLVTNLTYAHEHYELYLRYQC 120
           TYRP+CDGC ACTPVRI V +F  NRSQRRA  R++ LQT VT L Y  EHY+LYLRYQ 
Sbjct: 61  TYRPHCDGCEACTPVRIVVDQFIPNRSQRRAQSRHSDLQTSVTKLVYLAEHYDLYLRYQA 120

Query: 121 ARHAGGGMDQDSRDQYAQFLLQSKVNTRLVEFREADGTLRMVSIIDVLNDGLSSVYTFFD 180
           ARHAGGGMDQDSR+QYAQFLLQSKVNTRLVEFRE DGTLRMVSIIDVL+DGLSSVYTF+D
Sbjct: 121 ARHAGGGMDQDSREQYAQFLLQSKVNTRLVEFREDDGTLRMVSIIDVLDDGLSSVYTFYD 180

Query: 181 PDLPAASFGTYNILWQIEQARQLDMPYVYLGYWIKESQKMAYKTNYQPLEALHQGQWRLL 240
           PD   +S+GTYN+LWQIEQAR L +PYVYLGYWI+ES KM+YK N+QPLEAL +G+W++L
Sbjct: 181 PDEANSSYGTYNVLWQIEQARMLQIPYVYLGYWIEESPKMSYKKNFQPLEALRRGEWQVL 240


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 467,977
Number of extensions: 17633
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 163
Effective length of database: 740,042
Effective search space: 120626846
Effective search space used: 120626846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)