BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3185.p
         (188 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095616|ref|YP_001100691.1| putative MutT/nudix family prot...   270   3e-74

>gi|134095616|ref|YP_001100691.1| putative MutT/nudix family protein
           [Herminiimonas arsenicoxydans]
          Length = 211

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 125/185 (67%), Positives = 148/185 (80%), Gaps = 1/185 (0%)

Query: 1   MKFCSECGQTVSQQIPPDDTRLRYVCSNCGAIHYQNPKMVVGSIPVWEQDGQVKVLLCKR 60
           M FCSEC   VS  IP  D R RYVCS+CGAIHYQNPKMV+GSIPVW++DG +++LLCKR
Sbjct: 17  MNFCSECAHPVSLSIPAGDNRPRYVCSHCGAIHYQNPKMVLGSIPVWDEDGDMRILLCKR 76

Query: 61  AIEPRLGYWTLPAGFMENDETTEDAARRETEEEAGARVQLHELFSLVNVPHVHQVHLFYR 120
           AIEPR GYWTLPAGFMEN+ETT +AA RET EEAGA +QLHELFSL+NVPHVHQVH+FYR
Sbjct: 77  AIEPRRGYWTLPAGFMENNETTTEAAIRETVEEAGANIQLHELFSLLNVPHVHQVHMFYR 136

Query: 121 ATLLDLDYHAGVESLEVELYTEAQIPWQDIAFPTVEFTLRAFFADMKKVRSGEGGFTLHT 180
           ATLLDLDY AG+ESLEV+++   +IPW +IAF TV  TL+ F AD    ++G   +  HT
Sbjct: 137 ATLLDLDYQAGIESLEVKMFATDEIPWDEIAFQTVSHTLKFFLADHAARKNG-APYRFHT 195

Query: 181 EDIRR 185
            DI +
Sbjct: 196 YDILK 200


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.137    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 328,666
Number of extensions: 11237
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 188
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 111
Effective length of database: 746,632
Effective search space: 82876152
Effective search space used: 82876152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)